#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12DD3|1|A+ 2DD3|1|B (rep)5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stackSolution NMR2006-06-13
22DD2|1|A+ 2DD2|1|B5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3'An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stackSolution NMR2006-06-13

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_75753.1NR_all_15532.12.46(1) 2DD2|1|A+2DD2|1|B(1) 2DD3|1|A+2DD3|1|B(0)
NR_all_75753.1NR_all_50812.12.46(1) 2DD3|1|A+2DD3|1|B(1) 2DD2|1|A+2DD2|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_75753.1NR_all_50359.12.93(1) 2DD2|1|A+2DD2|1|B(1) 2DD3|1|A+2DD3|1|B(0)
NR_all_75753.1NR_all_59959.12.93(1) 2DD3|1|A+2DD3|1|B(1) 2DD2|1|A+2DD2|1|B(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12DD3|1|A+2DD3|1|BAn alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stackSOLUTION NMR10
22DD2|1|A+2DD2|1|BAn alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stackSOLUTION NMR10
Copyright 2024 BGSU RNA group. Page generated in 0.0134 s