Equivalence class NR_all_77343.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7SYW|1|i (rep) | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 2 | 7SYX|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 3 | 6HCJ|1|33 | Transfer RNA | P/E tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 2018-10-17 |
| 4 | 7SYV|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | Electron microscopy | 3.9 | 2022-07-20 |
| 5 | 7SYT|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 6 | 7SYU|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 7 | 5K0Y|1|N | Transfer RNA | tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | Electron microscopy | 5.8 | 2016-07-13 |
| 8 | 6HCQ|1|33 | Transfer RNA | P/E tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit collided di-ribosome (collided monosome) | Electron microscopy | 6.5 | 2018-10-17 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7SYV|1|i | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | ELECTRON MICROSCOPY | 3.9 | 75 |
| 2 | 7SYW|1|i | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 75 |
| 3 | 7SYX|1|i | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 75 |
| 4 | 5K0Y|1|N | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 75 |
| 5 | 7SYT|1|i | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 75 |
| 6 | 7SYU|1|i | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 75 |
| 7 | 6HCJ|1|33 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 75 |
| 8 | 6HCQ|1|33 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 75 |