Equivalence class NR_all_80570.9 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6C|1|D (rep) | RNA (5'-R(P*AP*A)-3') | synthetic construct | Vibrio cholerae Oligoribonuclease bound to pAA | X-ray diffraction | 1.62 | 2019-06-12 | |||
| 2 | 6N6J|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Human REXO2 bound to pAA | X-ray diffraction | 1.32 | 2019-06-12 | |||
| 3 | 6N6J|1|D | RNA (5'-R(P*AP*A)-3') | synthetic construct | Human REXO2 bound to pAA | X-ray diffraction | 1.32 | 2019-06-12 | |||
| 4 | 6P7Q|1|E | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 5 | 6P7Q|1|F | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 6 | 6P7Q|1|D | RNA (5'-R(P*AP*A)-3') | Escherichia coli | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-ray diffraction | 1.66 | 2019-12-25 | |||
| 7 | 6RCL|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Crystal structure of REXO2-D199A-AA | X-ray diffraction | 1.97 | 2019-10-09 | |||
| 8 | 5JJU|1|C | RNA (5'-R(P*AP*A)-3') | synthetic construct | Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-ray diffraction | 2.31 | 2016-05-04 | |||
| 9 | 4EJT|1|G | 5'-R(*AP*A)-3' | Staphylococcus epidermidis TcaR in complex with RNA | X-ray diffraction | 3 | 2013-06-05 | ||||
| 10 | 5CEU|1|C | RNA (5'-R(P*AP*A)-3') | Crystal structure of Rv2837c complexed with 5'-pApA | X-ray diffraction | 2.36 | 2015-12-23 | ||||
| 11 | 5CEU|1|D | RNA (5'-R(P*AP*A)-3') | Crystal structure of Rv2837c complexed with 5'-pApA | X-ray diffraction | 2.36 | 2015-12-23 | ||||
| 12 | 3J0O|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | Electron microscopy | 9 | 2011-11-16 | |||
| 13 | 3J0L|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | Electron microscopy | 9.8 | 2011-11-16 | |||
| 14 | 3J0Q|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | Electron microscopy | 10.6 | 2011-11-16 | |||
| 15 | 3J0P|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | Electron microscopy | 10.6 | 2011-11-16 |
Release history
| Release | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6RCL|1|C | Crystal structure of REXO2-D199A-AA | X-RAY DIFFRACTION | 1.97 | 2 |
| 2 | 6P7Q|1|D | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 3 | 5CEU|1|D | Crystal structure of Rv2837c complexed with 5'-pApA | X-RAY DIFFRACTION | 2.36 | 2 |
| 4 | 5JJU|1|C | Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-RAY DIFFRACTION | 2.31 | 2 |
| 5 | 5CEU|1|C | Crystal structure of Rv2837c complexed with 5'-pApA | X-RAY DIFFRACTION | 2.36 | 2 |
| 6 | 4EJT|1|G | Staphylococcus epidermidis TcaR in complex with RNA | X-RAY DIFFRACTION | 3 | 2 |
| 7 | 3J0Q|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | ELECTRON MICROSCOPY | 10.6 | 2 |
| 8 | 3J0O|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | ELECTRON MICROSCOPY | 9 | 2 |
| 9 | 3J0P|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | ELECTRON MICROSCOPY | 10.6 | 2 |
| 10 | 3J0L|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | ELECTRON MICROSCOPY | 9.8 | 2 |
| 11 | 6P7Q|1|E | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 12 | 6N6J|1|C | Human REXO2 bound to pAA | X-RAY DIFFRACTION | 1.32 | 3 |
| 13 | 6N6J|1|D | Human REXO2 bound to pAA | X-RAY DIFFRACTION | 1.32 | 3 |
| 14 | 6P7Q|1|F | Structure of E. coli MS115-1 NucC, 5'-pApA bound form | X-RAY DIFFRACTION | 1.66 | 2 |
| 15 | 6N6C|1|D | Vibrio cholerae Oligoribonuclease bound to pAA | X-RAY DIFFRACTION | 1.62 | 2 |