Equivalence class NR_all_82132.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CMN|1|D (rep) | Trans-Activation Response RNA Element | Human immunodeficiency virus 1 | Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7 | X-ray diffraction | 1.8 | 2018-06-06 | |||
| 2 | 6CYT|1|N | RNA (5'-R(P*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*U)-3') | Human immunodeficiency virus 1 | HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb | X-ray diffraction | 3.5 | 2018-12-12 | |||
| 3 | 5L1Z|1|N | RNA (5'-R(P*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*U)-3') | Human immunodeficiency virus 1 | TAR complex with HIV-1 Tat-AFF4-P-TEFb | X-ray diffraction | 5.9 | 2016-10-26 | |||
| 4 | 6MCE|1|A | TAR RNA | Human immunodeficiency virus 1 | Solution structure of HIV-1 TAR with Tat RNA Binding Domain | Solution NMR | 2018-10-31 | ||||
| 5 | 6D2U|1|B | RNA (29-MER) | synthetic construct | Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA | Solution NMR | 2018-12-12 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_82132.1 | NR_all_07356.1 | 3.59 | (1) 6MCE|1|A | (4) 6D2U|1|B, 5L1Z|1|N, 6CYT|1|N, 6CMN|1|D | (0) |
| NR_all_82132.1 | NR_all_32911.1 | 3.59 | (3) 5L1Z|1|N, 6CMN|1|D, 6CYT|1|N | (2) 6MCE|1|A, 6D2U|1|B | (0) |
| NR_all_82132.1 | NR_all_87910.1 | 3.59 | (1) 6D2U|1|B | (4) 5L1Z|1|N, 6CYT|1|N, 6CMN|1|D, 6MCE|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5L1Z|1|N | TAR complex with HIV-1 Tat-AFF4-P-TEFb | X-RAY DIFFRACTION | 5.9 | 21 |
| 2 | 6CMN|1|D | Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7 | X-RAY DIFFRACTION | 1.8 | 27 |
| 3 | 6D2U|1|B | Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | |
| 4 | 6MCE|1|A | Solution structure of HIV-1 TAR with Tat RNA Binding Domain | SOLUTION NMR | 30 | |
| 5 | 6CYT|1|N | HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb | X-RAY DIFFRACTION | 3.5 | 17 |