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Equivalence class NR_all_83491.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14RKV|1|A (rep)RNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.882014-11-19
24RNE|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
34RNE|1|FRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
41J8G|1|A5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
54RJ1|1|ARNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction0.922014-11-12
64RNE|1|BRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
71J8G|1|C5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
84RNE|1|CRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
91J8G|1|D5'-R(*UP*GP*GP*GP*GP*U)-3'X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-ray diffraction0.612001-11-23
104RNE|1|DRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
114RNE|1|ERNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
124RNE|1|GRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19
134RNE|1|HRNA (5'-R(*UP*GP*GP*GP*GP*U)-3')synthetic constructStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-ray diffraction1.012014-11-19

Release history

Release2.02.12.22.32.42.52.62.72.82.9
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_83491.1NR_1.5_83491.22.10(13) 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A(0) (1) 4XK0|1|C
NR_all_83491.1NR_2.0_83491.22.10(13) 1J8G|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C(0) (1) 4XK0|1|C
NR_all_83491.1NR_2.5_83491.22.10(13) 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A(0) (1) 4XK0|1|C
NR_all_83491.1NR_20.0_83491.22.10(13) 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C(0) (1) 4XK0|1|C
NR_all_83491.1NR_3.0_83491.22.10(13) 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F(0) (1) 4XK0|1|C
NR_all_83491.1NR_3.5_83491.22.10(13) 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A(0) (1) 4XK0|1|C
NR_all_83491.1NR_4.0_83491.22.10(13) 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|A(0) (1) 4XK0|1|C
NR_all_83491.1NR_all_83491.22.10(13) 1J8G|1|D, 1J8G|1|C, 1J8G|1|A, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|A, 4RJ1|1|A(0) (1) 4XK0|1|C

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14RNE|1|GStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
21J8G|1|AX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
34RNE|1|BStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
44RNE|1|DStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
54RKV|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.8810
64RNE|1|CStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
74RNE|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
84RNE|1|FStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.019
94RNE|1|EStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
104RNE|1|HStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION1.016
111J8G|1|CX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
124RJ1|1|AStructural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ionsX-RAY DIFFRACTION0.926
131J8G|1|DX-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High ResolutionX-RAY DIFFRACTION0.616
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