BGSU RNA Site //

Equivalence class NR_all_83891.9 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14WFA|1|Y (rep)5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.392015-10-21
25NGM|1|AB5S ribosomal RNA5S Ribosomal RNAStaphylococcus aureusBacteriaRF000012.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92017-10-04
35NG8|1|AB5S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762017-10-04
45NG8|1|BB5S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762017-10-04
55ND8|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Hibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72017-06-28
65ND9|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Hibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72017-06-28
75HKV|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.662017-05-03
84WCE|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.532015-10-21
94WFB|1|Y5S ribosomal RNA5S rRNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.432015-10-21
105HL7|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.552016-12-21
115LI0|1|B5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF0000170S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82016-12-28
124WF9|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.432015-10-21
135NRG|1|Y5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.442017-08-09
145TCU|1|C5S ribosomal RNA5S rRNA CHAINStaphylococcus aureusBacteriaRF00001Methicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92017-05-24
155T7V|1|C5S ribosomal RNA5S ribosomal RNAStaphylococcus aureusBacteriaRF00001Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62017-05-31

Release history

Release2.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.13
Date2017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_83891.9NR_all_83891.82.149(12) 4WFB|1|Y, 4WFA|1|Y, 4WF9|1|Y, 5TCU|1|C, 4WCE|1|Y, 5T7V|1|C, 5NRG|1|Y, 5ND9|1|B, 5ND8|1|B, 5LI0|1|B, 5HL7|1|Y, 5HKV|1|Y(3) 5NG8|1|BB, 5NG8|1|AB, 5NGM|1|AB(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_83891.9NR_all_83891.103.14(15) 4WFA|1|Y, 5NG8|1|BB, 4WF9|1|Y, 5NG8|1|AB, 4WCE|1|Y, 5ND9|1|B, 5ND8|1|B, 5LI0|1|B, 5TCU|1|C, 5HL7|1|Y, 5T7V|1|C, 5HKV|1|Y, 5NRG|1|Y, 4WFB|1|Y, 5NGM|1|AB(0) (2) 6FXC|1|BB, 6FXC|1|AB

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15T7V|1|CMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.6114
25TCU|1|CMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.9114
35ND8|1|BHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.7114
45ND9|1|BHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.7114
55LI0|1|B70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.8114
64WFB|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.43114
74WF9|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.43114
84WFA|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.39114
94WCE|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.53114
105NRG|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.44114
115HKV|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.66114
125HL7|1|YThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.55114
135NG8|1|BBThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.76115
145NG8|1|ABThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.76115
155NGM|1|AB2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.9115