Equivalence class NR_all_86561.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SZS|1|x (rep) | Transfer RNA | P-site tRNA-Pro(CGG), mRNA | Escherichia coli | Bacteria | RF00005 | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | Electron microscopy | 3.06 | 2019-12-04 |
| 2 | 5MGP|1|x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
| 3 | 6ENU|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 2017-11-22 |
| 4 | 6ENF|1|x | Transfer RNA | proline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 2017-11-22 |
| 5 | 6ENJ|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
| 6 | 6ENJ|1|9 | Transfer RNA | Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
Release history
| Release | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6SZS|1|x | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | ELECTRON MICROSCOPY | 3.06 | 77 |
| 2 | 5MGP|1|x | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 77 |
| 3 | 6ENF|1|x | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | ELECTRON MICROSCOPY | 3.2 | 77 |
| 4 | 6ENU|1|x | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.1 | 77 |
| 5 | 6ENJ|1|x | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |
| 6 | 6ENJ|1|9 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |