Equivalence class NR_all_87890.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8B2L|1|h1 (rep) | Small subunit ribosomal RNA | 18S rRNA | Nicotiana tabacum | Eukarya | RF01960 | Cryo-EM structure of the plant 80S ribosome | Electron microscopy | 2.2 | 1626 | 2023-08-23 |
| 2 | 8AUV|1|h | Small subunit ribosomal RNA | 18S rRNA | Nicotiana tabacum | Eukarya | RF01960 | Cryo-EM structure of the plant 40S subunit | Electron microscopy | 2.38 | 1626 | 2023-06-07 |
| 3 | 7QIZ|1|S2 | Small subunit ribosomal RNA | 18S | Solanum lycopersicum | Eukarya | RF01960 | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 1584 | 2022-08-03 |
| 4 | 8R6F|1|A | Small subunit ribosomal RNA | RNA (1177-MER) | Triticum aestivum | Eukarya | RF01960 | CryoEM structure of wheat 40S ribosomal subunit, body domain | Electron microscopy | 2.34 | 1177 | 2023-12-27 |
| 5 | 7QIX|1|2 | Small subunit ribosomal RNA | 18S rRNA body | Solanum lycopersicum | Eukarya | RF01960 | Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit. | Electron microscopy | 2.53 | 1110 | 2022-06-15 |
| 6 | 8R57|1|A | Small subunit ribosomal RNA | RNA (458-MER) | Triticum aestivum | Eukarya | RF01960 | CryoEM structure of wheat 40S ribosomal subunit, head domain | Electron microscopy | 2.55 | 458 | 2023-12-27 |
| 7 | 4V7E|1|Ad | Small subunit ribosomal RNA | 18S ribosomal RNA | Triticum aestivum | Eukarya | RF01960 | Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome | Electron microscopy | 5.5 | 1762 | 2014-07-09 |
| 8 | 7QIY|1|2 | Small subunit ribosomal RNA | 18S rRNA head | Solanum lycopersicum | Eukarya | RF01960 | Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit. | Electron microscopy | 2.58 | 474 | 2022-06-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 4V7E|1|Ad | Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome | ELECTRON MICROSCOPY | 5.5 | 1762 | |
| 2 | 8AUV|1|h | Cryo-EM structure of the plant 40S subunit | ELECTRON MICROSCOPY | 2.38 | 1626 | |
| 3 | 8B2L|1|h1 | Cryo-EM structure of the plant 80S ribosome | ELECTRON MICROSCOPY | 2.2 | 1626 | |
| 4 | 7QIZ|1|S2 | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 1584 | |
| 5 | 7QIX|1|2 | Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit. | ELECTRON MICROSCOPY | 2.53 | 1110 | |
| 6 | 8R6F|1|A | CryoEM structure of wheat 40S ribosomal subunit, body domain | ELECTRON MICROSCOPY | 2.34 | 1177 | |
| 7 | 8R57|1|A | CryoEM structure of wheat 40S ribosomal subunit, head domain | ELECTRON MICROSCOPY | 2.55 | 458 | |
| 8 | 7QIY|1|2 | Specific features and methylation sites of a plant ribosome. 40S head ribosomal subunit. | ELECTRON MICROSCOPY | 2.58 | 474 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: