RNA 3D Hub //

Equivalence class NR_all_88987.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14IOA|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
24IO9|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IOC|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
42ZJR|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
53CF5|1|XLarge subunit ribosomal RNARRNA-23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
62ZJQ|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
72ZJP|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
83DLL|1|XLarge subunit ribosomal RNArRNA-23S ribosomal RNADeinococcus radioduransBacteriaRF02541The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
92AAR|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-ray diffraction3.52005-08-23
102OGM|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-ray diffraction3.52007-05-01
113PIO|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23
123JQ4|1|ALarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
132D3O|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-ray diffraction3.352005-12-06
141Y69|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
153PIP|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
162OGO|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-ray diffraction3.662007-05-01
171JZY|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
181K01|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
191JZX|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.12001-10-26
201JZZ|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.82001-10-26
211J5A|1|ALarge subunit ribosomal RNA23S RRNADeinococcus radioduransBacteriaRF02541STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-ray diffraction3.52002-03-08
222O44|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-ray diffraction3.32007-12-04
232OGN|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-ray diffraction3.562007-05-01
241NWX|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
251OND|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-ray diffraction3.42003-04-15
261NWY|1|0Large subunit ribosomal RNA23S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
271NKW|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
283FWO|1|ALarge subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
291NJO|1|0Large subunit ribosomal RNA23S ribosomal RNA, RNA ACC(Puromycin)Deinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-ray diffraction3.72003-02-11
301P9X|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-ray diffraction3.42003-08-05
311NJP|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-ray diffraction3.52003-02-11
321NJM|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-ray diffraction3.62003-02-11
331NJN|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-ray diffraction3.72003-02-11
342O43|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-ray diffraction3.62007-12-04
351SM1|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
361XBP|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
371Z58|1|2Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Crystal structure of a complex of the ribosome large subunit with rapamycinX-ray diffraction3.82005-06-28
382O45|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-ray diffraction3.62007-12-04

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.34
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-31

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_88987.1NR_20.0_88987.22.35(38) 1JZY|1|A, 1NJN|1|0, 1NWX|1|0, 1SM1|1|0, 2AAR|1|0, 2O45|1|A, 2ZJP|1|X, 3DLL|1|X, 3PIP|1|X, 1JZX|1|A, 1NJM|1|0, 1NKW|1|0, 1P9X|1|0, 1Z58|1|2, 2O44|1|A, 2OGO|1|0, 3CF5|1|X, 3PIO|1|X, 4IOC|1|X, 1J5A|1|A, 1K01|1|A, 1NJP|1|0, 1OND|1|0, 1Y69|1|0, 2O43|1|A, 2OGN|1|0, 2ZJR|1|X, 3JQ4|1|A, 4IOA|1|X, 1JZZ|1|A, 1NJO|1|0, 1NWY|1|0, 1XBP|1|0, 2D3O|1|0, 2OGM|1|0, 2ZJQ|1|X, 3FWO|1|A, 4IO9|1|X(0) (1) 4U67|1|X
NR_all_88987.1NR_3.0_88987.22.35(1) 2ZJR|1|X(37) 2OGN|1|0, 3CF5|1|X, 3PIO|1|X, 4IOC|1|X, 1J5A|1|A, 1K01|1|A, 1NJP|1|0, 1OND|1|0, 1Y69|1|0, 2O43|1|A, 2ZJQ|1|X, 3JQ4|1|A, 4IOA|1|X, 1JZZ|1|A, 1NJO|1|0, 1NWY|1|0, 1XBP|1|0, 2D3O|1|0, 2OGM|1|0, 2ZJP|1|X, 3FWO|1|A, 4IO9|1|X, 1JZY|1|A, 1NJN|1|0, 1NWX|1|0, 1SM1|1|0, 2AAR|1|0, 2O45|1|A, 2OGO|1|0, 3DLL|1|X, 3PIP|1|X, 1JZX|1|A, 1NJM|1|0, 1NKW|1|0, 1P9X|1|0, 1Z58|1|2, 2O44|1|A(0)
NR_all_88987.1NR_3.5_88987.22.35(25) 1NJP|1|0, 1J5A|1|A, 1JZX|1|A, 1JZY|1|A, 1K01|1|A, 1P9X|1|0, 1SM1|1|0, 1NKW|1|0, 1XBP|1|0, 1NWX|1|0, 1Y69|1|0, 1NWY|1|0, 2AAR|1|0, 1OND|1|0, 2D3O|1|0, 3CF5|1|X, 3DLL|1|X, 2O44|1|A, 3PIO|1|X, 2OGM|1|0, 3PIP|1|X, 2ZJQ|1|X, 4IO9|1|X, 2ZJR|1|X, 4IOA|1|X(13) 1NJO|1|0, 2OGN|1|0, 3JQ4|1|A, 1NJN|1|0, 2O45|1|A, 3FWO|1|A, 1NJM|1|0, 2O43|1|A, 2ZJP|1|X, 1JZZ|1|A, 1Z58|1|2, 2OGO|1|0, 4IOC|1|X(0)
NR_all_88987.1NR_4.0_88987.22.35(38) 1JZY|1|A, 1NJN|1|0, 1NWX|1|0, 1SM1|1|0, 2AAR|1|0, 2O45|1|A, 2ZJP|1|X, 3DLL|1|X, 3PIP|1|X, 1JZX|1|A, 1NJM|1|0, 1NKW|1|0, 1P9X|1|0, 1Z58|1|2, 2O44|1|A, 2OGO|1|0, 3CF5|1|X, 3PIO|1|X, 4IOC|1|X, 1K01|1|A, 1NJP|1|0, 1OND|1|0, 1Y69|1|0, 2O43|1|A, 2OGN|1|0, 2ZJR|1|X, 3JQ4|1|A, 4IOA|1|X, 1J5A|1|A, 1JZZ|1|A, 1NJO|1|0, 1NWY|1|0, 1XBP|1|0, 2D3O|1|0, 2OGM|1|0, 2ZJQ|1|X, 3FWO|1|A, 4IO9|1|X(0) (1) 4U67|1|X
NR_all_88987.1NR_all_88987.22.35(38) 3JQ4|1|A, 4IOA|1|X, 1J5A|1|A, 1K01|1|A, 1NJP|1|0, 1OND|1|0, 1Y69|1|0, 2O43|1|A, 2OGN|1|0, 2ZJR|1|X, 4IO9|1|X, 1JZZ|1|A, 1NJO|1|0, 1NWY|1|0, 1XBP|1|0, 2D3O|1|0, 2OGM|1|0, 2ZJQ|1|X, 3FWO|1|A, 3PIP|1|X, 1JZY|1|A, 1NJN|1|0, 1NWX|1|0, 1SM1|1|0, 2AAR|1|0, 2O45|1|A, 2ZJP|1|X, 3DLL|1|X, 3PIO|1|X, 4IOC|1|X, 1JZX|1|A, 1NJM|1|0, 1NKW|1|0, 1P9X|1|0, 1Z58|1|2, 2O44|1|A, 2OGO|1|0, 3CF5|1|X(0) (1) 4U67|1|X

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12D3O|1|0Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-RAY DIFFRACTION3.352802
23DLL|1|XThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.52686
32ZJQ|1|XInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.32686
43CF5|1|XThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.32686
52ZJP|1|XThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.72686
62ZJR|1|XRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.912686
74IOC|1|XCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.62686
84IO9|1|XCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
94IOA|1|XCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
103PIO|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.252657
113PIP|1|XCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.452644
121Y69|1|0RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.332766
131Z58|1|2Crystal structure of a complex of the ribosome large subunit with rapamycinX-RAY DIFFRACTION3.82766
141K01|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
151JZX|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.12774
161JZY|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
171JZZ|1|AStructural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.82774
181J5A|1|ASTRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-RAY DIFFRACTION3.52774
191NJM|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-RAY DIFFRACTION3.62766
201NJN|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-RAY DIFFRACTION3.72766
211NJO|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-RAY DIFFRACTION3.72766
221NJP|1|0The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-RAY DIFFRACTION3.52766
231NWY|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.32766
241NWX|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.52766
251NKW|1|0Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.12766
261OND|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-RAY DIFFRACTION3.42765
271XBP|1|0Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.52766
281SM1|1|0COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.422766
291P9X|1|0THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-RAY DIFFRACTION3.42738
303JQ4|1|AThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.522765
312AAR|1|0Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-RAY DIFFRACTION3.52766
322OGN|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-RAY DIFFRACTION3.562766
332OGM|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-RAY DIFFRACTION3.52766
342OGO|1|0The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-RAY DIFFRACTION3.662765
352O43|1|AStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-RAY DIFFRACTION3.62766
362O44|1|AStructure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-RAY DIFFRACTION3.32766
373FWO|1|AThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.712765
382O45|1|AStructure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-RAY DIFFRACTION3.62766
Copyright 2024 BGSU RNA group. Page generated in 0.5290 s