Equivalence class NR_all_89026.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5L00|1|C+ 5L00|1|D (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 2 | 5L00|1|A+ 5L00|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 3 | 5V0H|1|A+ 5V0H|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA duplex with 2-MeImpG analogue bound-one binding site | X-ray diffraction | 1.9 | 2017-03-08 | ||
| 4 | 5KRG|1|A+ 5KRG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | ||
| 5 | 5KRG|1|C+ 5KRG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 |
Release history
| Release | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_89026.2 | NR_all_89026.1 | 2.118 | (4) 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B, 5KRG|1|C+5KRG|1|D, 5KRG|1|A+5KRG|1|B | (1) 5V0H|1|A+5V0H|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_89026.2 | NR_all_16232.1 | 3.24 | (5) 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B, 5KRG|1|C+5KRG|1|D, 5KRG|1|A+5KRG|1|B, 5V0H|1|A+5V0H|1|B | (0) | (3) 6C8N|1|A+6C8N|1|B, 6C8M|1|A+6C8M|1|B, 6C8O|1|A+6C8O|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5L00|1|A+5L00|1|B | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 2 | 5L00|1|C+5L00|1|D | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 3 | 5KRG|1|A+5KRG|1|B | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |
| 4 | 5KRG|1|C+5KRG|1|D | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |
| 5 | 5V0H|1|A+5V0H|1|B | RNA duplex with 2-MeImpG analogue bound-one binding site | X-RAY DIFFRACTION | 1.9 | 11 |