Equivalence class NR_all_89906.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3WFS|1|A (rep) | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
| 2 | 3WFS|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
| 3 | 3WFR|1|C | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 4 | 3WFR|1|D | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 5 | 3WFQ|1|D | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 6 | 3WFR|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 7 | 3WFQ|1|C | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 8 | 4WC5|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 3 | X-ray diffraction | 3.41 | 2015-04-15 |
| 9 | 3WFR|1|A | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 10 | 4WC6|1|B | Transfer RNA | RNA (75-mer) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 4 | X-ray diffraction | 3.41 | 2015-04-15 |
| 11 | 4WC2|1|B | Transfer RNA | RNA 75-mer | Thermotoga maritima | Bacteria | RF00005 | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2015-04-15 |
| 12 | 3WFQ|1|A | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 13 | 3WFQ|1|B | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 14 | 4WC4|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA-processing enzyme complex 2 | X-ray diffraction | 3.5 | 2015-04-15 |
| 15 | 4WC7|1|B | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 5 | X-ray diffraction | 3.1 | 2015-04-15 |
| 16 | 4WC3|1|B | Transfer RNA | RNA 76-mer | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 1 | X-ray diffraction | 3.1 | 2015-04-15 |
| 17 | 4X0A|1|B | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 6 | X-ray diffraction | 3.51 | 2015-04-15 |
| 18 | 4X0B|1|B | Transfer RNA | RNA (77-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 7 | X-ray diffraction | 3.2 | 2015-04-15 |
| 19 | 1VFG|1|C | RNA (75-MER) | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 | ||||
| 20 | 1VFG|1|D | RNA (75-MER) | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 |
Release history
| Release | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_89906.1 | NR_all_87177.1 | 2.19 | (12) 3WFQ|1|D, 3WFR|1|D, 1VFG|1|D, 3WFQ|1|C, 3WFR|1|C, 1VFG|1|C, 3WFQ|1|B, 3WFR|1|B, 3WFS|1|B, 3WFQ|1|A, 3WFR|1|A, 3WFS|1|A | (8) 4WC4|1|B, 4WC3|1|B, 4WC2|1|B, 4X0B|1|B, 4X0A|1|B, 4WC7|1|B, 4WC6|1|B, 4WC5|1|B | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4X0A|1|B | Structure of tRNA-processing enzyme complex 6 | X-RAY DIFFRACTION | 3.51 | 73 |
| 2 | 4WC4|1|B | tRNA-processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 74 |
| 3 | 4WC5|1|B | Structure of tRNA-processing enzyme complex 3 | X-RAY DIFFRACTION | 3.41 | 74 |
| 4 | 4WC7|1|B | Structure of tRNA-processing enzyme complex 5 | X-RAY DIFFRACTION | 3.1 | 75 |
| 5 | 4WC2|1|B | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 75 |
| 6 | 4WC6|1|B | Structure of tRNA-processing enzyme complex 4 | X-RAY DIFFRACTION | 3.41 | 75 |
| 7 | 4WC3|1|B | Structure of tRNA-processing enzyme complex 1 | X-RAY DIFFRACTION | 3.1 | 76 |
| 8 | 4X0B|1|B | Structure of tRNA-processing enzyme complex 7 | X-RAY DIFFRACTION | 3.2 | 77 |
| 9 | 1VFG|1|C | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 31 |
| 10 | 1VFG|1|D | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 34 |
| 11 | 3WFQ|1|D | tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 |
| 12 | 3WFQ|1|C | tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 |
| 13 | 3WFR|1|C | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 |
| 14 | 3WFR|1|D | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 |
| 15 | 3WFS|1|A | tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 |
| 16 | 3WFS|1|B | tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 |
| 17 | 3WFR|1|A | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 |
| 18 | 3WFQ|1|B | tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 |
| 19 | 3WFR|1|B | tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 |
| 20 | 3WFQ|1|A | tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 |