RNA 3D Hub //

Equivalence class NR_all_90506.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A5+ 4V88|1|A8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
24V8T|1|5+ 4V8T|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.12014-07-09
34V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
54U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
64U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
74U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
84V8Y|1|B5+ 4V8Y|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.32014-07-09
94V8Z|1|B5+ 4V8Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.62014-07-09
104U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
114U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
124U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
134U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
144U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
154U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
164U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
174U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
184U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
194U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
204U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
214U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
224U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
234U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
244U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
254U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
264U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
274U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
284U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
294U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
304U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
314U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
325APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
334U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
344U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
354U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
364U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
374U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
384U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
395APN|1|5+ 5APN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
404U4O|1|5+ 4U4O|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
414U4O|1|1+ 4U4O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
423J77|1|2S+ 3J77|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.22014-08-06
433J78|1|2S+ 3J78|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.32014-08-06
443J6Y|1|2S+ 3J6Y|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.12014-06-11
453J6X|1|2S+ 3J6X|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.12014-06-11
464V6I|1|DA+ 4V6I|1|DBLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.82014-07-09
474V7R|1|B1+ 4V7R|1|B3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
484V7R|1|D1+ 4V7R|1|D3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
495FL8|1|xLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
504V7F|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Arx1 pre-60S particle.Electron microscopy8.72014-07-09

Release history

Release2.542.552.562.572.582.592.602.612.622.63
Date2015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_90506.3NR_all_90506.22.54(48) 4V7R|1|D1+4V7R|1|D3, 4U3U|1|5+4U3U|1|8, 4U50|1|5+4U50|1|8, 4V7R|1|B1+4V7R|1|B3, 4U3U|1|1+4U3U|1|4, 4U50|1|1+4U50|1|4, 4V7F|1|1, 4U3N|1|5+4U3N|1|8, 4U4Z|1|5+4U4Z|1|8, 4V6I|1|DA+4V6I|1|DB, 4U3N|1|1+4U3N|1|4, 4U4Z|1|1+4U4Z|1|4, 4U6F|1|5+4U6F|1|8, 4U3M|1|5+4U3M|1|8, 4U4Y|1|5+4U4Y|1|8, 4U6F|1|1+4U6F|1|4, 4U3M|1|1+4U3M|1|4, 4U4Y|1|1+4U4Y|1|4, 4U56|1|5+4U56|1|8, 3J78|1|2S+3J78|1|8S, 4U4U|1|5+4U4U|1|8, 4U56|1|1+4U56|1|4, 3J77|1|2S+3J77|1|8S, 4U4U|1|1+4U4U|1|4, 4U55|1|5+4U55|1|8, 3J6Y|1|2S+3J6Y|1|8S, 4U4R|1|5+4U4R|1|8, 4U55|1|1+4U55|1|4, 3J6X|1|2S+3J6X|1|8S, 4U4R|1|1+4U4R|1|4, 4U53|1|5+4U53|1|8, 5FL8|1|x, 4U4Q|1|5+4U4Q|1|8, 4U53|1|1+4U53|1|4, 4V8Z|1|B5+4V8Z|1|B8, 4U4Q|1|1+4U4Q|1|4, 4V8Y|1|B5+4V8Y|1|B8, 4U4O|1|5+4U4O|1|8, 4U52|1|5+4U52|1|8, 4V8T|1|5+4V8T|1|8, 4U4O|1|1+4U4O|1|4, 4U52|1|1+4U52|1|4, 4V88|1|A5+4V88|1|A8, 4U4N|1|5+4U4N|1|8, 4U51|1|5+4U51|1|8, 4V88|1|A1+4V88|1|A4, 4U4N|1|1+4U4N|1|4, 4U51|1|1+4U51|1|4(2) 5APN|1|5+5APN|1|8, 5APO|1|5+5APO|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_90506.3NR_20.0_90506.42.64(49) 5APO|1|5+5APO|1|8, 3J6X|1|2S+3J6X|1|8S, 4U3M|1|1+4U3M|1|4, 4U3U|1|1+4U3U|1|4, 4U4O|1|1+4U4O|1|4, 4U4R|1|1+4U4R|1|4, 4U4Y|1|1+4U4Y|1|4, 4U50|1|1+4U50|1|4, 4U52|1|1+4U52|1|4, 4U55|1|1+4U55|1|4, 4U6F|1|1+4U6F|1|4, 4V7R|1|B1+4V7R|1|B3, 4V8T|1|5+4V8T|1|8, 3J78|1|2S+3J78|1|8S, 4U3N|1|5+4U3N|1|8, 4U4N|1|5+4U4N|1|8, 4U4Q|1|5+4U4Q|1|8, 4U4U|1|5+4U4U|1|8, 4U4Z|1|5+4U4Z|1|8, 4U51|1|5+4U51|1|8, 4U53|1|5+4U53|1|8, 4U56|1|5+4U56|1|8, 4V7F|1|1, 4V88|1|A5+4V88|1|A8, 5APN|1|5+5APN|1|8, 3J77|1|2S+3J77|1|8S, 4U3N|1|1+4U3N|1|4, 4U4N|1|1+4U4N|1|4, 4U4Q|1|1+4U4Q|1|4, 4U4U|1|1+4U4U|1|4, 4U4Z|1|1+4U4Z|1|4, 4U51|1|1+4U51|1|4, 4U53|1|1+4U53|1|4, 4U56|1|1+4U56|1|4, 4V6I|1|DA+4V6I|1|DB, 4V88|1|A1+4V88|1|A4, 4V8Z|1|B5+4V8Z|1|B8, 3J6Y|1|2S+3J6Y|1|8S, 4U3M|1|5+4U3M|1|8, 4U3U|1|5+4U3U|1|8, 4U4O|1|5+4U4O|1|8, 4U4R|1|5+4U4R|1|8, 4U4Y|1|5+4U4Y|1|8, 4U50|1|5+4U50|1|8, 4U52|1|5+4U52|1|8, 4U55|1|5+4U55|1|8, 4U6F|1|5+4U6F|1|8, 4V7R|1|D1+4V7R|1|D3, 4V8Y|1|B5+4V8Y|1|B8(1) 5FL8|1|x(1) 5GAK|1|1+5GAK|1|4
NR_all_90506.3NR_3.0_90506.42.64(14) 4U3M|1|5+4U3M|1|8, 4U3M|1|1+4U3M|1|4, 4U3U|1|1+4U3U|1|4, 4V88|1|A5+4V88|1|A8, 4U4Q|1|5+4U4Q|1|8, 4U3U|1|5+4U3U|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4U|1|5+4U4U|1|8, 4U4R|1|5+4U4R|1|8, 4U4R|1|1+4U4R|1|4, 4U4U|1|1+4U4U|1|4, 4U52|1|5+4U52|1|8, 4U52|1|1+4U52|1|4, 4V88|1|A1+4V88|1|A4(36) 4V8Y|1|B5+4V8Y|1|B8, 5FL8|1|x, 3J78|1|2S+3J78|1|8S, 4U4N|1|5+4U4N|1|8, 4U51|1|1+4U51|1|4, 4U4Y|1|5+4U4Y|1|8, 4U55|1|1+4U55|1|4, 4U50|1|5+4U50|1|8, 4U6F|1|1+4U6F|1|4, 4U53|1|5+4U53|1|8, 4V7R|1|B1+4V7R|1|B3, 4U56|1|5+4U56|1|8, 4V8Z|1|B5+4V8Z|1|B8, 4V7F|1|1, 5APO|1|5+5APO|1|8, 3J77|1|2S+3J77|1|8S, 4U4N|1|1+4U4N|1|4, 4U4Y|1|1+4U4Y|1|4, 4U50|1|1+4U50|1|4, 4U53|1|1+4U53|1|4, 4U56|1|1+4U56|1|4, 4V6I|1|DA+4V6I|1|DB, 4V8T|1|5+4V8T|1|8, 5APN|1|5+5APN|1|8, 3J6Y|1|2S+3J6Y|1|8S, 4U3N|1|5+4U3N|1|8, 4U4O|1|5+4U4O|1|8, 4U4Z|1|5+4U4Z|1|8, 4U51|1|5+4U51|1|8, 4U55|1|5+4U55|1|8, 4U6F|1|5+4U6F|1|8, 4V7R|1|D1+4V7R|1|D3, 3J6X|1|2S+3J6X|1|8S, 4U3N|1|1+4U3N|1|4, 4U4O|1|1+4U4O|1|4, 4U4Z|1|1+4U4Z|1|4(0)
NR_all_90506.3NR_3.5_90506.42.64(35) 5APO|1|5+5APO|1|8, 4U4N|1|5+4U4N|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U3M|1|1+4U3M|1|4, 4U3U|1|5+4U3U|1|8, 4U3M|1|5+4U3M|1|8, 4U4N|1|1+4U4N|1|4, 4U4Z|1|1+4U4Z|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4Q|1|1+4U4Q|1|4, 4U4U|1|5+4U4U|1|8, 4U4Q|1|5+4U4Q|1|8, 4U4Y|1|1+4U4Y|1|4, 4U4R|1|1+4U4R|1|4, 4U4Y|1|5+4U4Y|1|8, 4U51|1|1+4U51|1|4, 4U51|1|5+4U51|1|8, 4U4Z|1|5+4U4Z|1|8, 4U52|1|1+4U52|1|4, 4U50|1|1+4U50|1|4, 4U52|1|5+4U52|1|8, 4U50|1|5+4U50|1|8, 4U53|1|1+4U53|1|4, 4U53|1|5+4U53|1|8, 4U56|1|5+4U56|1|8, 4U6F|1|1+4U6F|1|4, 4U55|1|1+4U55|1|4, 4U6F|1|5+4U6F|1|8, 4U55|1|5+4U55|1|8, 4V88|1|A1+4V88|1|A4, 4U56|1|1+4U56|1|4, 4V88|1|A5+4V88|1|A8(15) 3J78|1|2S+3J78|1|8S, 4V8T|1|5+4V8T|1|8, 4V7F|1|1, 5FL8|1|x, 4V8Y|1|B5+4V8Y|1|B8, 3J6X|1|2S+3J6X|1|8S, 4U4O|1|1+4U4O|1|4, 4V7R|1|B1+4V7R|1|B3, 4V8Z|1|B5+4V8Z|1|B8, 3J6Y|1|2S+3J6Y|1|8S, 4U4O|1|5+4U4O|1|8, 4V7R|1|D1+4V7R|1|D3, 5APN|1|5+5APN|1|8, 3J77|1|2S+3J77|1|8S, 4V6I|1|DA+4V6I|1|DB(0)
NR_all_90506.3NR_4.0_90506.42.64(40) 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 4U3M|1|1+4U3M|1|4, 4U4N|1|5+4U4N|1|8, 4U4O|1|1+4U4O|1|4, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U4O|1|5+4U4O|1|8, 4U4Q|1|1+4U4Q|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4Z|1|5+4U4Z|1|8, 4U4R|1|1+4U4R|1|4, 4U50|1|1+4U50|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4U51|1|5+4U51|1|8, 4U52|1|1+4U52|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4Z|1|1+4U4Z|1|4, 4U6F|1|1+4U6F|1|4, 4U53|1|1+4U53|1|4, 4U6F|1|5+4U6F|1|8, 4V7R|1|B1+4V7R|1|B3, 4U53|1|5+4U53|1|8, 4U55|1|1+4U55|1|4, 4V7R|1|D1+4V7R|1|D3, 4V88|1|A1+4V88|1|A4, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4V88|1|A5+4V88|1|A8, 5APN|1|5+5APN|1|8, 4U56|1|5+4U56|1|8, 4U52|1|5+4U52|1|8, 5APO|1|5+5APO|1|8(10) 4V8T|1|5+4V8T|1|8, 3J6X|1|2S+3J6X|1|8S, 4V6I|1|DA+4V6I|1|DB, 4V8Z|1|B5+4V8Z|1|B8, 3J77|1|2S+3J77|1|8S, 4V7F|1|1, 5FL8|1|x, 3J78|1|2S+3J78|1|8S, 4V8Y|1|B5+4V8Y|1|B8, 3J6Y|1|2S+3J6Y|1|8S(1) 5GAK|1|1+5GAK|1|4
NR_all_90506.3NR_all_90506.42.64(50) 3J6X|1|2S+3J6X|1|8S, 4U3M|1|1+4U3M|1|4, 4U3U|1|1+4U3U|1|4, 4U4O|1|1+4U4O|1|4, 4U4R|1|1+4U4R|1|4, 4U4Y|1|1+4U4Y|1|4, 4U50|1|1+4U50|1|4, 4U52|1|1+4U52|1|4, 4U55|1|1+4U55|1|4, 4U6F|1|1+4U6F|1|4, 4V7R|1|B1+4V7R|1|B3, 4V8T|1|5+4V8T|1|8, 5APO|1|5+5APO|1|8, 3J78|1|2S+3J78|1|8S, 4U3N|1|5+4U3N|1|8, 4U4N|1|5+4U4N|1|8, 4U4Q|1|5+4U4Q|1|8, 4U4U|1|5+4U4U|1|8, 4U4Z|1|5+4U4Z|1|8, 4U51|1|5+4U51|1|8, 4U53|1|5+4U53|1|8, 4U56|1|5+4U56|1|8, 4V7F|1|1, 4V88|1|A5+4V88|1|A8, 5APN|1|5+5APN|1|8, 3J77|1|2S+3J77|1|8S, 4U3N|1|1+4U3N|1|4, 4U4N|1|1+4U4N|1|4, 4U4Q|1|1+4U4Q|1|4, 4U4U|1|1+4U4U|1|4, 4U4Z|1|1+4U4Z|1|4, 4U51|1|1+4U51|1|4, 4U53|1|1+4U53|1|4, 4U56|1|1+4U56|1|4, 4V6I|1|DA+4V6I|1|DB, 4V88|1|A1+4V88|1|A4, 4V8Z|1|B5+4V8Z|1|B8, 3J6Y|1|2S+3J6Y|1|8S, 4U3M|1|5+4U3M|1|8, 4U3U|1|5+4U3U|1|8, 4U4O|1|5+4U4O|1|8, 4U4R|1|5+4U4R|1|8, 4U4Y|1|5+4U4Y|1|8, 4U50|1|5+4U50|1|8, 4U52|1|5+4U52|1|8, 4U55|1|5+4U55|1|8, 4U6F|1|5+4U6F|1|8, 4V7R|1|D1+4V7R|1|D3, 4V8Y|1|B5+4V8Y|1|B8, 5FL8|1|x(0) (1) 5GAK|1|1+5GAK|1|4

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15FL8|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52779
24V7R|1|B1+4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43206
34V7R|1|D1+4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43206
44U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
54U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
64U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
74U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
84U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
94U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
104U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
114U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
124U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
134U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
144U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
154V8T|1|5+4V8T|1|8Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.13150
164V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
174U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
184U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
194U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
204U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
214U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
224U4O|1|5+4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63150
233J6X|1|2S+3J6X|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.13308
243J6Y|1|2S+3J6Y|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.13308
254U4O|1|1+4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63149
264U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
274U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
284U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
294U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
304V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
314U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
324U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
334U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
344U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
354U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
364U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
374U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
384U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
394U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
404U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
414U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
424U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
435APN|1|5+5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913092
445APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
453J78|1|2S+3J78|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.33302
463J77|1|2S+3J77|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.23287
474V8Z|1|B5+4V8Z|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.63147
484V8Y|1|B5+4V8Y|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.33147
494V6I|1|DA+4V6I|1|DBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.83354
504V7F|1|1Arx1 pre-60S particle.ELECTRON MICROSCOPY8.73394
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