RNA 3D Hub //

Equivalence class NR_all_90506.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A5+ 4V88|1|A8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
24V8T|1|5+ 4V8T|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.12014-07-09
34V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
54U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
64U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
74U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
84V8Z|1|B5+ 4V8Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.62014-07-09
94V8Y|1|B5+ 4V8Y|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.32014-07-09
104U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
114U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
124U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
134U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
144U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
154U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
164U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
174U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
184U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
195FCJ|1|5+ 5FCJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
204U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
214U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
225FCJ|1|1+ 5FCJ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.12016-05-11
234U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
244U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
254U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
264U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
274U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
284U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
294U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
304U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
314U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
324U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
335FCI|1|1+ 5FCI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
344U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
355APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
364U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
374U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
384U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
394U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
404U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
415FCI|1|5+ 5FCI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-ray diffraction3.42016-05-11
424U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
435APN|1|5+ 5APN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
444U4O|1|5+ 4U4O|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
454U4O|1|1+ 4U4O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
463J77|1|2S+ 3J77|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.22014-08-06
473J78|1|2S+ 3J78|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.32014-08-06
483J6Y|1|2S+ 3J6Y|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.12014-06-11
493J6X|1|2S+ 3J6X|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.12014-06-11
504V6I|1|DA+ 4V6I|1|DBLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.82014-07-09
515GAK|1|1+ 5GAK|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24
524V7R|1|B1+ 4V7R|1|B3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
534V7R|1|D1+ 4V7R|1|D3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction42014-07-09
545FL8|1|xLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
554V7F|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Arx1 pre-60S particle.Electron microscopy8.72014-07-09

Release history

Release2.752.762.77
Date2016-05-132016-05-202016-05-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_90506.5NR_all_90506.42.75(51) 4U56|1|5+4U56|1|8, 4U4U|1|5+4U4U|1|8, 4V88|1|A5+4V88|1|A8, 3J78|1|2S+3J78|1|8S, 4U51|1|5+4U51|1|8, 4U4N|1|5+4U4N|1|8, 4U56|1|1+4U56|1|4, 4U4U|1|1+4U4U|1|4, 3J77|1|2S+3J77|1|8S, 4U51|1|1+4U51|1|4, 4U4N|1|1+4U4N|1|4, 4V88|1|A1+4V88|1|A4, 5GAK|1|1+5GAK|1|4, 4U55|1|5+4U55|1|8, 4U4R|1|5+4U4R|1|8, 4V7R|1|D1+4V7R|1|D3, 3J6Y|1|2S+3J6Y|1|8S, 4U50|1|5+4U50|1|8, 4U3U|1|5+4U3U|1|8, 5FL8|1|x, 4U4R|1|1+4U4R|1|4, 4V7R|1|B1+4V7R|1|B3, 3J6X|1|2S+3J6X|1|8S, 4U50|1|1+4U50|1|4, 4U3U|1|1+4U3U|1|4, 4U55|1|1+4U55|1|4, 5APO|1|5+5APO|1|8, 4U4Q|1|5+4U4Q|1|8, 4V7F|1|1, 4U4Z|1|5+4U4Z|1|8, 4U3N|1|5+4U3N|1|8, 4U53|1|5+4U53|1|8, 5APN|1|5+5APN|1|8, 4U4Q|1|1+4U4Q|1|4, 4V6I|1|DA+4V6I|1|DB, 4U4Z|1|1+4U4Z|1|4, 4U3N|1|1+4U3N|1|4, 4U53|1|1+4U53|1|4, 4V8Z|1|B5+4V8Z|1|B8, 4U4O|1|5+4U4O|1|8, 4U6F|1|5+4U6F|1|8, 4U4Y|1|5+4U4Y|1|8, 4U3M|1|5+4U3M|1|8, 4U52|1|5+4U52|1|8, 4V8Y|1|B5+4V8Y|1|B8, 4U4O|1|1+4U4O|1|4, 4U6F|1|1+4U6F|1|4, 4U4Y|1|1+4U4Y|1|4, 4U3M|1|1+4U3M|1|4, 4U52|1|1+4U52|1|4, 4V8T|1|5+4V8T|1|8(4) 5FCI|1|1+5FCI|1|4, 5FCJ|1|1+5FCJ|1|4, 5FCJ|1|5+5FCJ|1|8, 5FCI|1|5+5FCI|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_90506.5NR_20.0_90506.62.78(54) 4U56|1|5+4U56|1|8, 4U4O|1|1+4U4O|1|4, 4U6F|1|1+4U6F|1|4, 4U4Q|1|1+4U4Q|1|4, 4V6I|1|DA+4V6I|1|DB, 4U4Q|1|5+4U4Q|1|8, 4V7F|1|1, 4U4R|1|1+4U4R|1|4, 4V7R|1|B1+4V7R|1|B3, 4U4U|1|1+4U4U|1|4, 4V88|1|A1+4V88|1|A4, 4U4U|1|5+4U4U|1|8, 4V88|1|A5+4V88|1|A8, 4U4Y|1|1+4U4Y|1|4, 4U4Z|1|1+4U4Z|1|4, 4U4Z|1|5+4U4Z|1|8, 3J6X|1|2S+3J6X|1|8S, 4U50|1|1+4U50|1|4, 3J77|1|2S+3J77|1|8S, 4U51|1|1+4U51|1|4, 3J78|1|2S+3J78|1|8S, 4U51|1|5+4U51|1|8, 4U3M|1|1+4U3M|1|4, 4U52|1|1+4U52|1|4, 4U3N|1|1+4U3N|1|4, 4U53|1|1+4U53|1|4, 4U3N|1|5+4U3N|1|8, 4U53|1|5+4U53|1|8, 4U3U|1|1+4U3U|1|4, 4U55|1|1+4U55|1|4, 4U4N|1|1+4U4N|1|4, 4U56|1|1+4U56|1|4, 4U4N|1|5+4U4N|1|8, 4V8T|1|5+4V8T|1|8, 4V8Z|1|B5+4V8Z|1|B8, 5APN|1|5+5APN|1|8, 5APO|1|5+5APO|1|8, 5FCI|1|5+5FCI|1|8, 5FCJ|1|1+5FCJ|1|4, 5FCJ|1|5+5FCJ|1|8, 4U4O|1|5+4U4O|1|8, 4U6F|1|5+4U6F|1|8, 4U4R|1|5+4U4R|1|8, 4V7R|1|D1+4V7R|1|D3, 4U4Y|1|5+4U4Y|1|8, 3J6Y|1|2S+3J6Y|1|8S, 4U50|1|5+4U50|1|8, 4U3M|1|5+4U3M|1|8, 4U52|1|5+4U52|1|8, 4U3U|1|5+4U3U|1|8, 4U55|1|5+4U55|1|8, 4V8Y|1|B5+4V8Y|1|B8, 5FCI|1|1+5FCI|1|4, 5GAK(1) 5FL8|1|x(3) 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 3JCT|1|1+3JCT|1|2
NR_all_90506.5NR_3.0_90506.62.78(14) 4U52|1|5+4U52|1|8, 4U52|1|1+4U52|1|4, 4V88|1|A1+4V88|1|A4, 4U4U|1|5+4U4U|1|8, 4V88|1|A5+4V88|1|A8, 4U3M|1|5+4U3M|1|8, 4U3M|1|1+4U3M|1|4, 4U3U|1|1+4U3U|1|4, 4U4Q|1|5+4U4Q|1|8, 4U3U|1|5+4U3U|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4U|1|1+4U4U|1|4, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8(41) 5APO|1|5+5APO|1|8, 4U4N|1|5+4U4N|1|8, 5FCJ|1|5+5FCJ|1|8, 4U4Y|1|5+4U4Y|1|8, 3J6Y|1|2S+3J6Y|1|8S, 4U50|1|5+4U50|1|8, 4U3N|1|5+4U3N|1|8, 4U53|1|5+4U53|1|8, 4U4O|1|5+4U4O|1|8, 4U56|1|5+4U56|1|8, 4V7F|1|1, 4V8Y|1|B5+4V8Y|1|B8, 4U3N|1|1+4U3N|1|4, 5FCI|1|1+5FCI|1|4, 4U4O|1|1+4U4O|1|4, 5FL8|1|x, 4U4Z|1|1+4U4Z|1|4, 3J77|1|2S+3J77|1|8S, 4U51|1|1+4U51|1|4, 4U4N|1|1+4U4N|1|4, 4U55|1|1+4U55|1|4, 4U4Y|1|1+4U4Y|1|4, 4U6F|1|1+4U6F|1|4, 4U50|1|1+4U50|1|4, 4V7R|1|B1+4V7R|1|B3, 4U53|1|1+4U53|1|4, 4V8Z|1|B5+4V8Z|1|B8, 4U56|1|1+4U56|1|4, 5FCI|1|5+5FCI|1|8, 4V6I|1|DA+4V6I|1|DB, 5GAK|1|1+5GAK|1|4, 4V8T|1|5+4V8T|1|8, 3J78|1|2S+3J78|1|8S, 4U4Z|1|5+4U4Z|1|8, 4U51|1|5+4U51|1|8, 4U55|1|5+4U55|1|8, 4U6F|1|5+4U6F|1|8, 4V7R|1|D1+4V7R|1|D3, 5APN|1|5+5APN|1|8, 5FCJ|1|1+5FCJ|1|4, 3J6X|1|2S+3J6X|1|8S(0)
NR_all_90506.5NR_3.5_90506.62.78(39) 4U4Q|1|5+4U4Q|1|8, 4U4Q|1|1+4U4Q|1|4, 4U6F|1|1+4U6F|1|4, 4U56|1|5+4U56|1|8, 4U50|1|5+4U50|1|8, 4U4Z|1|5+4U4Z|1|8, 4U50|1|1+4U50|1|4, 4U4N|1|1+4U4N|1|4, 4U4N|1|5+4U4N|1|8, 4U6F|1|5+4U6F|1|8, 4U51|1|1+4U51|1|4, 4U52|1|1+4U52|1|4, 4U4U|1|1+4U4U|1|4, 4U4R|1|1+4U4R|1|4, 4U3M|1|1+4U3M|1|4, 4V88|1|A5+4V88|1|A8, 4V88|1|A1+4V88|1|A4, 4U3M|1|5+4U3M|1|8, 4U4R|1|5+4U4R|1|8, 4U51|1|5+4U51|1|8, 5APO|1|5+5APO|1|8, 4U52|1|5+4U52|1|8, 4U53|1|1+4U53|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4U|1|5+4U4U|1|8, 4U3N|1|5+4U3N|1|8, 4U3N|1|1+4U3N|1|4, 5FCI|1|5+5FCI|1|8, 4U53|1|5+4U53|1|8, 5FCI|1|1+5FCI|1|4, 4U4Y|1|1+4U4Y|1|4, 5FCJ|1|1+5FCJ|1|4, 4U55|1|1+4U55|1|4, 4U55|1|5+4U55|1|8, 4U4Z|1|1+4U4Z|1|4, 4U3U|1|5+4U3U|1|8, 4U56|1|1+4U56|1|4, 4U3U|1|1+4U3U|1|4, 5FCJ|1|5+5FCJ|1|8(16) 4U4O|1|1+4U4O|1|4, 3J6X|1|2S+3J6X|1|8S, 5FL8|1|x, 4V8T|1|5+4V8T|1|8, 3J6Y|1|2S+3J6Y|1|8S, 5APN|1|5+5APN|1|8, 4V7R|1|B1+4V7R|1|B3, 3J77|1|2S+3J77|1|8S, 4U4O|1|5+4U4O|1|8, 4V8Z|1|B5+4V8Z|1|B8, 4V6I|1|DA+4V6I|1|DB, 4V7R|1|D1+4V7R|1|D3, 5GAK|1|1+5GAK|1|4, 3J78|1|2S+3J78|1|8S, 4V7F|1|1, 4V8Y|1|B5+4V8Y|1|B8(3) 5DC3|1|1+5DC3|1|4, 3JCT|1|1+3JCT|1|2, 5DC3|1|5+5DC3|1|8
NR_all_90506.5NR_4.0_90506.62.78(45) 5FCI|1|1+5FCI|1|4, 5APN|1|5+5APN|1|8, 4U51|1|1+4U51|1|4, 4U50|1|1+4U50|1|4, 4U3U|1|1+4U3U|1|4, 4U3N|1|1+4U3N|1|4, 5FCI|1|5+5FCI|1|8, 4U51|1|5+4U51|1|8, 4U3U|1|5+4U3U|1|8, 5APO|1|5+5APO|1|8, 4U50|1|5+4U50|1|8, 4U3N|1|5+4U3N|1|8, 4V88|1|A5+4V88|1|A8, 4U4Z|1|5+4U4Z|1|8, 4U4N|1|1+4U4N|1|4, 4U3M|1|5+4U3M|1|8, 5FCJ|1|1+5FCJ|1|4, 4U53|1|5+4U53|1|8, 4U52|1|1+4U52|1|4, 4U4O|1|5+4U4O|1|8, 5FCJ|1|5+5FCJ|1|8, 4U52|1|5+4U52|1|8, 4U4N|1|5+4U4N|1|8, 4U55|1|1+4U55|1|4, 4U4Q|1|1+4U4Q|1|4, 5GAK|1|1+5GAK|1|4, 4U53|1|1+4U53|1|4, 4U4O|1|1+4U4O|1|4, 4U56|1|5+4U56|1|8, 4U55|1|5+4U55|1|8, 4U4R|1|5+4U4R|1|8, 4U4Q|1|5+4U4Q|1|8, 4U6F|1|1+4U6F|1|4, 4U4U|1|1+4U4U|1|4, 4U56|1|1+4U56|1|4, 4U4R|1|1+4U4R|1|4, 4U3M|1|1+4U3M|1|4, 4V88|1|A1+4V88|1|A4, 4V7R|1|B1+4V7R|1|B3, 4U4Z|1|1+4U4Z|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4V7R|1|D1+4V7R|1|D3, 4U4Y|1|5+4U4Y|1|8, 4U6F|1|5+4U6F|1|8(10) 3J6Y|1|2S+3J6Y|1|8S, 3J78|1|2S+3J78|1|8S, 3J6X|1|2S+3J6X|1|8S, 3J77|1|2S+3J77|1|8S, 5FL8|1|x, 4V7F|1|1, 4V8Y|1|B5+4V8Y|1|B8, 4V6I|1|DA+4V6I|1|DB, 4V8T|1|5+4V8T|1|8, 4V8Z|1|B5+4V8Z|1|B8(3) 5DC3|1|5+5DC3|1|8, 5DC3|1|1+5DC3|1|4, 3JCT|1|1+3JCT|1|2
NR_all_90506.5NR_all_90506.62.78(55) 3J77|1|2S+3J77|1|8S, 3J78|1|2S+3J78|1|8S, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 3J6Y|1|2S+3J6Y|1|8S, 5APN|1|5+5APN|1|8, 4U50|1|5+4U50|1|8, 5FCI|1|1+5FCI|1|4, 4U51|1|1+4U51|1|4, 5FCI|1|5+5FCI|1|8, 4U51|1|5+4U51|1|8, 5FCJ|1|1+5FCJ|1|4, 4U52|1|5+4U52|1|8, 5FL8|1|x, 4U53|1|1+4U53|1|4, 5GAK|1|1+5GAK|1|4, 4U53|1|5+4U53|1|8, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4U4N|1|5+4U4N|1|8, 4U56|1|5+4U56|1|8, 4U4O|1|5+4U4O|1|8, 4U6F|1|5+4U6F|1|8, 4U4Q|1|1+4U4Q|1|4, 4V6I|1|DA+4V6I|1|DB, 4U4Q|1|5+4U4Q|1|8, 4V7F|1|1, 4U4R|1|5+4U4R|1|8, 4V7R|1|D1+4V7R|1|D3, 4U4U|1|1+4U4U|1|4, 4V88|1|A1+4V88|1|A4, 4U4U|1|5+4U4U|1|8, 4V88|1|A5+4V88|1|A8, 4U4Y|1|5+4U4Y|1|8, 4V8Y|1|B5+4V8Y|1|B8, 4U4Z|1|1+4U4Z|1|4, 4V8Z|1|B5+4V8Z|1|B8, 4U4Z|1|5+4U4Z|1|8, 4U3M|1|1+4U3M|1|4, 4U3U|1|1+4U3U|1|4, 3J6X|1|2S+3J6X|1|8S, 4U50|1|1+4U50|1|4, 5APO|1|5+5APO|1|8, 4U52|1|1+4U52|1|4, 5FCJ|1|5+5FCJ|1|8, 4U55|1|1+4U55|1|4, 4U4O|1|1+4U4O|1|4, 4U6F|1|1+4U6F|1|4, 4U4R|1|1+4U4R|1|4, 4V7R|1|B1+4V7R|1|B3, 4U4Y|1|1+4U4Y(0) (3) 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 3JCT|1|1+3JCT|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15FL8|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52779
24V7R|1|B1+4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43206
34V7R|1|D1+4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43206
45FCI|1|5+5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
55FCJ|1|5+5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
64U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
74U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
84U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
94U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
104U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
114U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
124U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
134U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
144U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
154U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
164U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
174U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
184V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
194V8T|1|5+4V8T|1|8Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.13150
204U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
214U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
224U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
234U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
244U4O|1|5+4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63150
253J77|1|2S+3J77|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.23287
263J78|1|2S+3J78|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.33302
275GAK|1|1+5GAK|1|4Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883165
284U4O|1|1+4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63149
295FCJ|1|1+5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
304U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
314U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
324U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
334U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
344U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
354U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
364U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
374U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
384U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
394U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
404U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
414U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
424U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
434U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
444U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
454V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
464U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
475FCI|1|1+5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
485APN|1|5+5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913092
495APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
503J6Y|1|2S+3J6Y|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.13308
513J6X|1|2S+3J6X|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.13308
524V8Y|1|B5+4V8Y|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.33147
534V8Z|1|B5+4V8Z|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.63147
544V6I|1|DA+4V6I|1|DBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.83354
554V7F|1|1Arx1 pre-60S particle.ELECTRON MICROSCOPY8.73394
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