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Equivalence class NR_all_90633.11 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WF9|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.432015-10-21
25HL7|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-ray diffraction3.552016-12-21
34WFA|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.392015-10-21
45HKV|1|XLarge subunit ribosomal RNA23s ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-ray diffraction3.662017-05-03
54WCE|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-ray diffraction3.532015-10-21
64WFB|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.432015-10-21
75NRG|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.442017-08-09
86HMA|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.652018-11-14
95NGM|1|AALarge subunit ribosomal RNA23S Ribosomal RNAStaphylococcus aureusBacteriaRF025412.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
105T7V|1|BLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
115ND8|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
125ND9|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
135LI0|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
145TCU|1|BLarge subunit ribosomal RNA23S RRNAStaphylococcus aureusBacteriaRF02541Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24
155NG8|1|BA23S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762017-10-04
166FXC|1|BALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21
175NG8|1|AA23S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762017-10-04
186FXC|1|AALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762018-03-21

Release history

Release3.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.65
Date2018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_90633.11NR_all_90633.103.48(17) 5NG8|1|BA, 5NG8|1|AA, 5ND9|1|A, 5ND8|1|A, 5LI0|1|A, 5HL7|1|X, 5HKV|1|X, 4WFB|1|X, 4WFA|1|X, 4WF9|1|X, 4WCE|1|X, 6FXC|1|BA, 6FXC|1|AA, 5TCU|1|B, 5T7V|1|B, 5NRG|1|X, 5NGM|1|AA(1) 6HMA|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_90633.11NR_all_90633.123.66(18) 4WFA|1|X, 5NG8|1|BA, 6HMA|1|A, 4WF9|1|X, 5NG8|1|AA, 6FXC|1|BA, 4WCE|1|X, 5ND9|1|A, 6FXC|1|AA, 5ND8|1|A, 5TCU|1|B, 5LI0|1|A, 5HL7|1|X, 5T7V|1|B, 5HKV|1|X, 5NRG|1|X, 4WFB|1|X, 5NGM|1|AA(0) (2) 6DDG|1|1, 6DDD|1|1

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16HMA|1|AImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.652831
25NGM|1|AA2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92905
35NG8|1|AAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
46FXC|1|AAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
56FXC|1|BAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
65NG8|1|BAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
75NRG|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.442711
85HKV|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.662695
95HL7|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.552705
104WCE|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.532708
114WFA|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.392711
124WFB|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.432707
134WF9|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.432712
145LI0|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82914
155ND8|1|AHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72912
165ND9|1|AHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72914
175TCU|1|BMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92755
185T7V|1|BMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62768
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