Equivalence class NR_all_92081.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4UN5|1|A (rep) | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |||
| 2 | 4UN3|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |||
| 3 | 4UN4|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_92081.1 | NR_2.5_92081.2 | 2.68 | (2) 4UN5|1|A, 4UN4|1|A | (1) 4UN3|1|A | (1) 5FQ5|1|A |
| NR_all_92081.1 | NR_20.0_92081.2 | 2.68 | (3) 4UN5|1|A, 4UN4|1|A, 4UN3|1|A | (0) | (1) 5FQ5|1|A |
| NR_all_92081.1 | NR_3.0_92081.2 | 2.68 | (3) 4UN3|1|A, 4UN5|1|A, 4UN4|1|A | (0) | (1) 5FQ5|1|A |
| NR_all_92081.1 | NR_3.5_92081.2 | 2.68 | (3) 4UN4|1|A, 4UN3|1|A, 4UN5|1|A | (0) | (1) 5FQ5|1|A |
| NR_all_92081.1 | NR_4.0_92081.2 | 2.68 | (3) 4UN5|1|A, 4UN4|1|A, 4UN3|1|A | (0) | (1) 5FQ5|1|A |
| NR_all_92081.1 | NR_all_92081.2 | 2.68 | (3) 4UN5|1|A, 4UN4|1|A, 4UN3|1|A | (0) | (1) 5FQ5|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UN5|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 |
| 2 | 4UN4|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 |
| 3 | 4UN3|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 |