Equivalence class NR_all_92081.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A (rep) | SGRNA | synthetic construct | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 2016-03-23 | |||
| 2 | 4UN5|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |||
| 3 | 5FW1|1|A | SGRNA | synthetic construct | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 2016-04-20 | |||
| 4 | 4UN3|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |||
| 5 | 4UN4|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_92081.3 | NR_2.5_92081.4 | 2.80 | (4) 4UN4|1|A, 5FW1|1|A, 5FQ5|1|A, 4UN5|1|A | (1) 4UN3|1|A | (0) |
| NR_all_92081.3 | NR_20.0_92081.4 | 2.80 | (5) 4UN3|1|A, 4UN5|1|A, 5FW1|1|A, 4UN4|1|A, 5FQ5|1|A | (0) | (2) 5FW2|1|A, 5FW3|1|A |
| NR_all_92081.3 | NR_3.0_92081.4 | 2.80 | (5) 4UN4|1|A, 5FQ5|1|A, 4UN3|1|A, 4UN5|1|A, 5FW1|1|A | (0) | (2) 5FW2|1|A, 5FW3|1|A |
| NR_all_92081.3 | NR_3.5_92081.4 | 2.80 | (5) 4UN3|1|A, 4UN5|1|A, 5FW1|1|A, 4UN4|1|A, 5FQ5|1|A | (0) | (2) 5FW2|1|A, 5FW3|1|A |
| NR_all_92081.3 | NR_4.0_92081.4 | 2.80 | (5) 4UN4|1|A, 5FQ5|1|A, 4UN3|1|A, 4UN5|1|A, 5FW1|1|A | (0) | (2) 5FW2|1|A, 5FW3|1|A |
| NR_all_92081.3 | NR_all_92081.4 | 2.80 | (5) 5FW1|1|A, 4UN3|1|A, 4UN5|1|A, 5FQ5|1|A, 4UN4|1|A | (0) | (2) 5FW2|1|A, 5FW3|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UN5|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 |
| 2 | 5FQ5|1|A | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 83 |
| 3 | 4UN4|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 |
| 4 | 5FW1|1|A | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 81 |
| 5 | 4UN3|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 |
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