Equivalence class NR_all_93339.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6UU4|1|333 (rep) | RNA 3-mer (dinucleotide GpA-primed synthesis) | synthetic construct | E. coli sigma-S transcription initiation complex with a 3-nt RNA ('old' crystal soaked with GTP and dinucleotide GpA for 30 minutes) | X-ray diffraction | 4.3 | 2020-08-26 | |||
| 2 | 6UU0|1|333 | RNA 3-mer (de novo synthesized) | synthetic construct | E. coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching GTP ('Fresh' crystal soaked with GTP for 1 hour) | X-ray diffraction | 3.9 | 2020-08-26 | |||
| 3 | 6UUC|1|333 | RNA 3-mer | synthetic construct | E. coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching ATP ('Fresh' crystal soaked with ATP for 2 hours) | X-ray diffraction | 4.1 | 2020-08-26 | |||
| 4 | 6UU2|1|333 | RNA 3-mer | synthetic construct | E. coli sigma-S transcription initiation complex with 3-nt RNA ('Old' crystal soaked with GTP and ATP for 30 minutes) | X-ray diffraction | 4.4 | 2020-08-26 | |||
| 5 | 6B6H|1|3 | NASCENT RNA 3-MER | Escherichia coli | The cryo-EM structure of a bacterial class I transcription activation complex | Electron microscopy | 3.9 | 2017-11-15 | |||
| 6 | 6PB4|1|3 | Nascent RNA | Escherichia coli | The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2 | Electron microscopy | 4.35 | 2020-03-18 |
Release history
| Release | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_93339.1 | NR_all_61908.1 | 3.141 | (2) 6B6H|1|3, 6PB4|1|3 | (4) 6UU0|1|333, 6UUC|1|333, 6UU4|1|333, 6UU2|1|333 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_93339.1 | NR_all_93339.2 | 3.173 | (6) 6UUC|1|333, 6UU4|1|333, 6UU2|1|333, 6UU0|1|333, 6PB4|1|3, 6B6H|1|3 | (0) | (1) 6XL9|1|R |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|