Equivalence class NR_all_93493.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7R81|1|A1+ 7R81|1|C1 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Neurospora crassa | Eukarya | RF02543 + RF00002 | Structure of the translating Neurospora crassa ribosome arrested by cycloheximide | Electron microscopy | 2.7 | 2021-12-01 |
| 2 | 7OLC|1|1+ 7OLC|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Chaetomium thermophilum var. thermophilum DSM 1495 | Eukarya | RF02543 + RF00002 | Thermophilic eukaryotic 80S ribosome at idle POST state | Electron microscopy | 2.9 | 2022-01-26 |
| 3 | 8IA0|1|C1+ 8IA0|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (319-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 | Electron microscopy | 2.7 | 2023-05-17 |
| 4 | 7OLD|1|1+ 7OLD|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Chaetomium thermophilum var. thermophilum DSM 1495 | Eukarya | RF02543 + RF00002 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | Electron microscopy | 3 | 2022-01-26 |
| 5 | 8I9Z|1|C1+ 8I9Z|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (319-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 | Electron microscopy | 2.7 | 2023-05-17 |
| 6 | 7Z3N|1|1+ 7Z3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation | Electron microscopy | 3.2 | 2023-04-12 |
| 7 | 7Z3O|1|1+ 7Z3O|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S rRNA, 5.8S rRNA | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation | Electron microscopy | 3.3 | 2023-04-12 |
| 8 | 8I9X|1|C1+ 8I9X|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (319-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 | Electron microscopy | 2.8 | 2023-05-17 |
| 9 | 8I9Y|1|C1+ 8I9Y|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (319-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 | Electron microscopy | 3.1 | 2023-05-17 |
| 10 | 8I9W|1|C1+ 8I9W|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (319-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 | Electron microscopy | 3.1 | 2023-05-17 |
| 11 | 8I9V|1|C1+ 8I9V|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (256-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 | Electron microscopy | 3.1 | 2023-05-17 |
| 12 | 8I9R|1|C1+ 8I9R|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (256-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP | Electron microscopy | 3.1 | 2023-05-17 |
| 13 | 8I9T|1|C1+ 8I9T|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (256-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1 | Electron microscopy | 3.6 | 2023-05-17 |
| 14 | 8I9P|1|C1+ 8I9P|1|C2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (3341-MER), RNA (306-MER) | Thermochaetoides thermophila DSM 1495 | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 | Electron microscopy | 3 | 2023-05-17 |
Release history
| Release | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_93493.1 | NR_all_84627.1 | 3.283 | (5) 7R81|1|A1+7R81|1|C1, 7OLD|1|1+7OLD|1|4, 7Z3O|1|1+7Z3O|1|4, 7OLC|1|1+7OLC|1|4, 7Z3N|1|1+7Z3N|1|4 | (9) 8I9Y|1|C1+8I9Y|1|C2, 8I9X|1|C1+8I9X|1|C2, 8I9W|1|C1+8I9W|1|C2, 8I9V|1|C1+8I9V|1|C2, 8I9T|1|C1+8I9T|1|C2, 8I9R|1|C1+8I9R|1|C2, 8I9P|1|C1+8I9P|1|C2, 8IA0|1|C1+8IA0|1|C2, 8I9Z|1|C1+8I9Z|1|C2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_93493.1 | NR_all_93493.2 | 3.309 | (14) 8I9Z|1|C1+8I9Z|1|C2, 7OLC|1|1+7OLC|1|4, 7R81|1|A1+7R81|1|C1, 8I9P|1|C1+8I9P|1|C2, 8I9T|1|C1+8I9T|1|C2, 8I9W|1|C1+8I9W|1|C2, 8I9Y|1|C1+8I9Y|1|C2, 7Z3O|1|1+7Z3O|1|4, 8IA0|1|C1+8IA0|1|C2, 8I9R|1|C1+8I9R|1|C2, 8I9V|1|C1+8I9V|1|C2, 7OLD|1|1+7OLD|1|4, 8I9X|1|C1+8I9X|1|C2, 7Z3N|1|1+7Z3N|1|4 | (0) | (7) 8PV1|1|C1+8PV1|1|C2, 8PV5|1|C1+8PV5|1|C2, 8PV7|1|C1+8PV7|1|C2, 8PV2|1|C1+8PV2|1|C2, 8PV4|1|C1+8PV4|1|C2, 8PV6|1|C1+8PV6|1|C2, 8PV3|1|C1+8PV3|1|C2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7OLD|1|1+7OLD|1|4 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | ELECTRON MICROSCOPY | 3 | 3192 |
| 2 | 7OLC|1|1+7OLC|1|4 | Thermophilic eukaryotic 80S ribosome at idle POST state | ELECTRON MICROSCOPY | 2.9 | 3190 |
| 3 | 7Z3O|1|1+7Z3O|1|4 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation | ELECTRON MICROSCOPY | 3.3 | 3190 |
| 4 | 7Z3N|1|1+7Z3N|1|4 | Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation | ELECTRON MICROSCOPY | 3.2 | 3190 |
| 5 | 7R81|1|A1+7R81|1|C1 | Structure of the translating Neurospora crassa ribosome arrested by cycloheximide | ELECTRON MICROSCOPY | 2.7 | 3123 |
| 6 | 8I9Z|1|C1+8I9Z|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 | ELECTRON MICROSCOPY | 2.7 | 2787 |
| 7 | 8IA0|1|C1+8IA0|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 | ELECTRON MICROSCOPY | 2.7 | 2928 |
| 8 | 8I9Y|1|C1+8I9Y|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 | ELECTRON MICROSCOPY | 3.1 | 2609 |
| 9 | 8I9X|1|C1+8I9X|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 | ELECTRON MICROSCOPY | 2.8 | 2658 |
| 10 | 8I9W|1|C1+8I9W|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 | ELECTRON MICROSCOPY | 3.1 | 2163 |
| 11 | 8I9T|1|C1+8I9T|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1 | ELECTRON MICROSCOPY | 3.6 | 2132 |
| 12 | 8I9V|1|C1+8I9V|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 | ELECTRON MICROSCOPY | 3.1 | 2152 |
| 13 | 8I9P|1|C1+8I9P|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 | ELECTRON MICROSCOPY | 3 | 1307 |
| 14 | 8I9R|1|C1+8I9R|1|C2 | Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP | ELECTRON MICROSCOPY | 3.1 | 2045 |