BGSU RNA Site //

Equivalence class NR_all_93493.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17R81|1|A1+ 7R81|1|C1 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNANeurospora crassaEukaryaRF02543 + RF00002Structure of the translating Neurospora crassa ribosome arrested by cycloheximideElectron microscopy2.72021-12-01
27OLC|1|1+ 7OLC|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at idle POST stateElectron microscopy2.92022-01-26
38IA0|1|C1+ 8IA0|1|C2RNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6Electron microscopy2.72023-05-17
47OLD|1|1+ 7OLD|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy32022-01-26
58I9Z|1|C1+ 8I9Z|1|C2RNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4Electron microscopy2.72023-05-17
67Z3N|1|1+ 7Z3N|1|426S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationElectron microscopy3.22023-04-12
77Z3O|1|1+ 7Z3O|1|426S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationElectron microscopy3.32023-04-12
88I9X|1|C1+ 8I9X|1|C2RNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1Electron microscopy2.82023-05-17
98I9Y|1|C1+ 8I9Y|1|C2RNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2Electron microscopy3.12023-05-17
108I9W|1|C1+ 8I9W|1|C2RNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3Electron microscopy3.12023-05-17
118I9V|1|C1+ 8I9V|1|C2RNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2Electron microscopy3.12023-05-17
128I9R|1|C1+ 8I9R|1|C2RNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.12023-05-17
138I9T|1|C1+ 8I9T|1|C2RNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1Electron microscopy3.62023-05-17
148I9P|1|C1+ 8I9P|1|C2RNA (3341-MER), RNA (306-MER)Thermochaetoides thermophila DSM 1495Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16Electron microscopy32023-05-17

Release history

Release3.283
Date2023-05-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_93493.1NR_all_84627.13.283(5) 7Z3N|1|1+7Z3N|1|4, 7OLC|1|1+7OLC|1|4, 7R81|1|A1+7R81|1|C1, 7OLD|1|1+7OLD|1|4, 7Z3O|1|1+7Z3O|1|4(9) 8I9X|1|C1+8I9X|1|C2, 8I9P|1|C1+8I9P|1|C2, 8I9W|1|C1+8I9W|1|C2, 8I9V|1|C1+8I9V|1|C2, 8I9T|1|C1+8I9T|1|C2, 8I9R|1|C1+8I9R|1|C2, 8IA0|1|C1+8IA0|1|C2, 8I9Z|1|C1+8I9Z|1|C2, 8I9Y|1|C1+8I9Y|1|C2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17OLD|1|1+7OLD|1|4Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY33192
27OLC|1|1+7OLC|1|4Thermophilic eukaryotic 80S ribosome at idle POST stateELECTRON MICROSCOPY2.93190
37Z3O|1|1+7Z3O|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationELECTRON MICROSCOPY3.33190
47Z3N|1|1+7Z3N|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationELECTRON MICROSCOPY3.23190
57R81|1|A1+7R81|1|C1Structure of the translating Neurospora crassa ribosome arrested by cycloheximideELECTRON MICROSCOPY2.73123
68I9Z|1|C1+8I9Z|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4ELECTRON MICROSCOPY2.72787
78IA0|1|C1+8IA0|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6ELECTRON MICROSCOPY2.72928
88I9Y|1|C1+8I9Y|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2ELECTRON MICROSCOPY3.12609
98I9X|1|C1+8I9X|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1ELECTRON MICROSCOPY2.82658
108I9W|1|C1+8I9W|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3ELECTRON MICROSCOPY3.12163
118I9T|1|C1+8I9T|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1ELECTRON MICROSCOPY3.62132
128I9V|1|C1+8I9V|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2ELECTRON MICROSCOPY3.12152
138I9P|1|C1+8I9P|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16ELECTRON MICROSCOPY31307
148I9R|1|C1+8I9R|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.12045
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