RNA 3D Hub //

Equivalence class NR_all_93493.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18PV7|1|C1+ 8PV7|1|C2 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.1232342023-11-15
28PV1|1|C1+ 8PV1|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.5632342023-11-15
37R81|1|A1+ 7R81|1|C1Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNANeurospora crassaEukaryaRF02543 + RF00002Structure of the translating Neurospora crassa ribosome arrested by cycloheximideElectron microscopy2.732812021-12-01
48PV2|1|C1+ 8PV2|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.6332092023-11-15
57OLC|1|1+ 7OLC|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at idle POST stateElectron microscopy2.933472022-01-26
68IA0|1|C1+ 8IA0|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6Electron microscopy2.731842023-05-17
77OLD|1|1+ 7OLD|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy333482022-01-26
88PV4|1|C1+ 8PV4|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.932922023-11-15
98PV5|1|C1+ 8PV5|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.8632122023-11-15
108PV3|1|C1+ 8PV3|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.831542023-11-15
118PV6|1|C1+ 8PV6|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.9432562023-11-15
128I9Z|1|C1+ 8I9Z|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4Electron microscopy2.730432023-05-17
137Z3N|1|1+ 7Z3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationElectron microscopy3.233472023-04-12
147Z3O|1|1+ 7Z3O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationElectron microscopy3.333472023-04-12
158I9X|1|C1+ 8I9X|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1Electron microscopy2.829142023-05-17
168I9Y|1|C1+ 8I9Y|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2Electron microscopy3.128652023-05-17
178I9W|1|C1+ 8I9W|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3Electron microscopy3.124192023-05-17
188I9V|1|C1+ 8I9V|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2Electron microscopy3.123102023-05-17
198I9R|1|C1+ 8I9R|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.122762023-05-17
208I9T|1|C1+ 8I9T|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1Electron microscopy3.622902023-05-17
218I9P|1|C1+ 8I9P|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (306-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16Electron microscopy315632023-05-17

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17OLD|1|1+ 7OLD|1|4Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY33348
27OLC|1|1+ 7OLC|1|4Thermophilic eukaryotic 80S ribosome at idle POST stateELECTRON MICROSCOPY2.93347
37Z3O|1|1+ 7Z3O|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationELECTRON MICROSCOPY3.33347
47Z3N|1|1+ 7Z3N|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationELECTRON MICROSCOPY3.23347
57R81|1|A1+ 7R81|1|C1Structure of the translating Neurospora crassa ribosome arrested by cycloheximideELECTRON MICROSCOPY2.73281
68PV6|1|C1+ 8PV6|1|C2Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.943256
78PV7|1|C1+ 8PV7|1|C2Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.123234
88PV1|1|C1+ 8PV1|1|C2Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.563234
98PV3|1|C1+ 8PV3|1|C2Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.83154
108PV4|1|C1+ 8PV4|1|C2Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.93292
118PV2|1|C1+ 8PV2|1|C2Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.633209
128PV5|1|C1+ 8PV5|1|C2Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.863212
138I9Z|1|C1+ 8I9Z|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4ELECTRON MICROSCOPY2.73043
148IA0|1|C1+ 8IA0|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6ELECTRON MICROSCOPY2.73184
158I9Y|1|C1+ 8I9Y|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2ELECTRON MICROSCOPY3.12865
168I9X|1|C1+ 8I9X|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1ELECTRON MICROSCOPY2.82914
178I9W|1|C1+ 8I9W|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3ELECTRON MICROSCOPY3.12419
188I9T|1|C1+ 8I9T|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1ELECTRON MICROSCOPY3.62290
198I9V|1|C1+ 8I9V|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2ELECTRON MICROSCOPY3.12310
208I9P|1|C1+ 8I9P|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16ELECTRON MICROSCOPY31563
218I9R|1|C1+ 8I9R|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.12276

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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