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Equivalence class NR_all_93493.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18PV7|1|C1+ 8PV7|1|C2 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.122023-11-15
28PVL|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureElectron microscopy2.192023-12-06
38PVK|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureElectron microscopy2.552023-12-06
48PV1|1|C1+ 8PV1|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.562023-11-15
57R81|1|A1+ 7R81|1|C1Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNANeurospora crassaEukaryaRF02543 + RF00002Structure of the translating Neurospora crassa ribosome arrested by cycloheximideElectron microscopy2.72021-12-01
68PV2|1|C1+ 8PV2|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.632023-11-15
77OLC|1|1+ 7OLC|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at idle POST stateElectron microscopy2.92022-01-26
88IA0|1|C1+ 8IA0|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6Electron microscopy2.72023-05-17
97OLD|1|1+ 7OLD|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy32022-01-26
108PV4|1|C1+ 8PV4|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.92023-11-15
118PV5|1|C1+ 8PV5|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.862023-11-15
128PV3|1|C1+ 8PV3|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.82023-11-15
138PV8|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureElectron microscopy2.912024-01-10
148PV6|1|C1+ 8PV6|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.942023-11-15
158I9Z|1|C1+ 8I9Z|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4Electron microscopy2.72023-05-17
167Z3N|1|1+ 7Z3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationElectron microscopy3.22023-04-12
177Z3O|1|1+ 7Z3O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationElectron microscopy3.32023-04-12
188I9X|1|C1+ 8I9X|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1Electron microscopy2.82023-05-17
198I9Y|1|C1+ 8I9Y|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2Electron microscopy3.12023-05-17
208I9W|1|C1+ 8I9W|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (319-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3Electron microscopy3.12023-05-17
218I9V|1|C1+ 8I9V|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2Electron microscopy3.12023-05-17
228I9R|1|C1+ 8I9R|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.12023-05-17
238I9T|1|C1+ 8I9T|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (256-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1Electron microscopy3.62023-05-17
248I9P|1|C1+ 8I9P|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (3341-MER), RNA (306-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16Electron microscopy32023-05-17

Release history

Release3.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17OLD|1|1+7OLD|1|4Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY33192
27OLC|1|1+7OLC|1|4Thermophilic eukaryotic 80S ribosome at idle POST stateELECTRON MICROSCOPY2.93190
37Z3O|1|1+7Z3O|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationELECTRON MICROSCOPY3.33190
47Z3N|1|1+7Z3N|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationELECTRON MICROSCOPY3.23190
57R81|1|A1+7R81|1|C1Structure of the translating Neurospora crassa ribosome arrested by cycloheximideELECTRON MICROSCOPY2.73123
68PV8|1|C1Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureELECTRON MICROSCOPY2.913053
78PV6|1|C1+8PV6|1|C2Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.943068
88PVK|1|C1Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureELECTRON MICROSCOPY2.553104
98PV1|1|C1+8PV1|1|C2Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.563044
108PV7|1|C1+8PV7|1|C2Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.123044
118PVL|1|C1Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureELECTRON MICROSCOPY2.193044
128PV4|1|C1+8PV4|1|C2Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.93102
138PV3|1|C1+8PV3|1|C2Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.82964
148PV2|1|C1+8PV2|1|C2Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.633022
158PV5|1|C1+8PV5|1|C2Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.863026
168I9Z|1|C1+8I9Z|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4ELECTRON MICROSCOPY2.72787
178IA0|1|C1+8IA0|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6ELECTRON MICROSCOPY2.72928
188I9Y|1|C1+8I9Y|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2ELECTRON MICROSCOPY3.12609
198I9X|1|C1+8I9X|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1ELECTRON MICROSCOPY2.82658
208I9W|1|C1+8I9W|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3ELECTRON MICROSCOPY3.12163
218I9T|1|C1+8I9T|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1ELECTRON MICROSCOPY3.62132
228I9V|1|C1+8I9V|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2ELECTRON MICROSCOPY3.12152
238I9P|1|C1+8I9P|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16ELECTRON MICROSCOPY31307
248I9R|1|C1+8I9R|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.12045
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