RNA 3D Hub //

Equivalence class NR_all_93855.8 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16ZM6|1|AA (rep)Small subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
26ZM5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
36VMI|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
46VLZ|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
56RW4|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3Electron microscopy2.972020-06-03
66RW5|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3Electron microscopy3.142020-06-03
77L08|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.492021-05-12
87A5I|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.72020-12-23
97A5K|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.72020-12-23
106ZSC|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
116ZSD|1|AASmall subunit ribosomal RNA12SrRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.72020-09-16
123J9M|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15
137OG4|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.82021-06-23
146ZSA|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy42020-10-21
156ZSG|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy42020-10-14
166ZS9|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy42020-10-14
177A5G|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAElectron microscopy4.332020-12-23
186NU2|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.92019-04-17
197A5F|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsElectron microscopy4.42020-12-23
206ZSB|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.52020-09-16
216NU3|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.42019-04-17
226ZSE|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy52020-09-16

Release history

Release3.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.234
Date2021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_93855.8NR_all_93855.73.184(21) 7L08|1|AA, 7A5K|1|A6, 7A5I|1|A6, 7A5G|1|A6, 7A5F|1|A6, 6ZSG|1|AA, 6ZSE|1|AA, 6ZSD|1|AA, 6ZSC|1|AA, 6ZSB|1|AA, 6ZSA|1|AA, 6ZS9|1|AA, 6ZM6|1|AA, 6ZM5|1|AA, 6VMI|1|AA, 6VLZ|1|AA, 6RW5|1|A, 6RW4|1|A, 6NU3|1|AA, 6NU2|1|AA, 3J9M|1|AA(1) 7OG4|1|AA(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_93855.8NR_all_93855.93.235(22) 6NU2|1|AA, 6ZSG|1|AA, 6RW5|1|A, 7A5G|1|A6, 6VMI|1|AA, 7L08|1|AA, 6ZM6|1|AA, 6ZSB|1|AA, 6ZSD|1|AA, 6ZSA|1|AA, 6RW4|1|A, 7A5K|1|A6, 6ZSC|1|AA, 6VLZ|1|AA, 7OG4|1|AA, 6ZSE|1|AA, 6ZM5|1|AA, 7A5F|1|A6, 3J9M|1|AA, 6ZS9|1|AA, 6NU3|1|AA, 7A5I|1|A6(0) (7) 7PO3|1|A, 7PO1|1|A, 7PNY|1|A, 7PO0|1|A, 7PO2|1|A, 7PNX|1|A, 7PNZ|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16VLZ|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.97944
26VMI|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.96944
37L08|1|AACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.49944
46RW4|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF3ELECTRON MICROSCOPY2.97950
56RW5|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3ELECTRON MICROSCOPY3.14950
66ZM5|1|AAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.89954
76ZM6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.59954
86ZSG|1|AAHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY4927
96ZSA|1|AAHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY4927
106ZSD|1|AAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.7927
116ZSB|1|AAHuman mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.5927
127OG4|1|AAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.8924
136ZSC|1|AAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.5927
146ZS9|1|AAHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY4927
156ZSE|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY5927
163J9M|1|AAStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.5923
177A5I|1|A6Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.7928
187A5G|1|A6Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAELECTRON MICROSCOPY4.33928
197A5F|1|A6Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsELECTRON MICROSCOPY4.4928
207A5K|1|A6Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.7928
216NU2|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.9923
226NU3|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.4923
Copyright 2024 BGSU RNA group. Page generated in 1.5938 s