Equivalence class NR_all_94683.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4XNR|1|X (rep) | Vibrio Vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-RAY DIFFRACTION | 2.21 | 2015-05-06 |
| 2 | 4TZY|1|X | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-RAY DIFFRACTION | 2.57 | 2014-09-10 |
| 3 | 4TZX|1|X | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-RAY DIFFRACTION | 2.01 | 2014-09-10 |
| 4 | 5UZA|1|X | RNA (71-MER) | Vibrio vulnificus | Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-RAY DIFFRACTION | 2.22 | 2018-02-28 |
| 5 | 6VWT|1|B | adenine riboswitch aptamer variant | Vibrio vulnificus | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 2020-11-11 |
| 6 | 6VWT|1|A | adenine riboswitch aptamer variant | Vibrio vulnificus | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 2020-11-11 |
| 7 | 6VWV|1|B | adenine riboswitch aptamer variant | Vibrio vulnificus | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 2020-11-11 |
| 8 | 6VWV|1|A | adenine riboswitch aptamer variant | Vibrio vulnificus | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 2020-11-11 |
| 9 | 5SWE|1|X | Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain | Vibrio vulnificus | Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-RAY DIFFRACTION | 3 | 2016-11-23 |
Release history
| Release | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5UZA|1|X | Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-RAY DIFFRACTION | 2.22 | 69 |
| 2 | 4XNR|1|X | Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-RAY DIFFRACTION | 2.21 | 71 |
| 3 | 4TZY|1|X | Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-RAY DIFFRACTION | 2.57 | 71 |
| 4 | 4TZX|1|X | Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-RAY DIFFRACTION | 2.01 | 71 |
| 5 | 5SWE|1|X | Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-RAY DIFFRACTION | 3 | 71 |
| 6 | 6VWT|1|B | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 71 |
| 7 | 6VWT|1|A | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 71 |
| 8 | 6VWV|1|B | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 71 |
| 9 | 6VWV|1|A | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 71 |