Equivalence class NR_all_94683.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4XNR|1|X (rep) | Vibrio Vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-RAY DIFFRACTION | 2.21 | 2015-05-06 |
| 2 | 4TZY|1|X | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-RAY DIFFRACTION | 2.57 | 2014-09-10 |
| 3 | 4TZX|1|X | Vibrio vulnificus Adenine Riboswitch | Vibrio vulnificus | Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-RAY DIFFRACTION | 2.01 | 2014-09-10 |
| 4 | 5UZA|1|X | RNA (71-MER) | Vibrio vulnificus | Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-RAY DIFFRACTION | 2.22 | 2018-02-28 |
| 5 | 6VWT|1|B | adenine riboswitch aptamer variant | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 2020-11-11 | |
| 6 | 6VWT|1|A | adenine riboswitch aptamer variant | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 2020-11-11 | |
| 7 | 6VWV|1|B | adenine riboswitch aptamer variant | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 2020-11-11 | |
| 8 | 6VWV|1|A | adenine riboswitch aptamer variant | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 2020-11-11 | |
| 9 | 5SWE|1|X | Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain | Vibrio vulnificus | Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-RAY DIFFRACTION | 3 | 2016-11-23 |
Release history
| Release | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5UZA|1|X | Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR) | X-RAY DIFFRACTION | 2.22 | 69 |
| 2 | 4XNR|1|X | Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine | X-RAY DIFFRACTION | 2.21 | 71 |
| 3 | 4TZY|1|X | Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+ | X-RAY DIFFRACTION | 2.57 | 71 |
| 4 | 4TZX|1|X | Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+ | X-RAY DIFFRACTION | 2.01 | 71 |
| 5 | 5SWE|1|X | Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography | X-RAY DIFFRACTION | 3 | 71 |
| 6 | 6VWT|1|B | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 71 |
| 7 | 6VWT|1|A | Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3.03 | 71 |
| 8 | 6VWV|1|B | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 71 |
| 9 | 6VWV|1|A | Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand binding | X-RAY DIFFRACTION | 3 | 71 |