#IFECompound(s)RNA source organismTitleMethodResolutionDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION12014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.972016-04-13
36Y0Y|1|ARNA (27-MER)Sarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.952021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.042003-11-25
54NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.012014-11-19
66ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.92020-12-16
73DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.972009-03-24
83DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION12009-03-24
97L3R|1|ARNA (27-MER)23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.012021-05-05
104Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION12015-11-18
117JJE|1|ARNA (27-MER)Sarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.252020-12-23
123DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION12009-03-24
134NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.162014-12-10
145NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.852017-07-26
153S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.12012-04-11
165MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.852018-01-17
173DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.962009-03-24
183DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION12009-03-24
19483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.111999-10-08
203S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.22012-04-11
217JJD|1|ARNA (27-MER)Sarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.212020-12-23
221MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.412003-02-25
23480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.51999-10-08
246Y0T|1|BRNA (27-MER)Sarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
256Y0T|1|ARNA (27-MER)Sarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
267M3V|1|ARNA (27-MER)RNA bulged-G motifX-RAY DIFFRACTION2.192022-03-23
277JJF|1|ARNA/DNA (27-mer)Sarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.22020-12-23
281JBR|1|D31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.152001-10-26
297EEN|1|ADNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
307EEN|1|BDNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
317EEM|1|ARNA (27-MER)RNA bulged-G motifX-RAY DIFFRACTION2.5932022-03-23
321JBT|1|C29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
336ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
347EEN|1|DDNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
351JBT|1|D29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
361JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
377EEN|1|CDNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.72022-03-23
386ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
396ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
401JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
417EEO|1|ADNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.7012022-03-23
427EEO|1|BDNA/RNA (27-MER)Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.7012022-03-23
433EQ3|1|DFragment H95 of the 23S rRNAEscherichia coliModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16
443EP2|1|DFragment H95 of the 23S rRNAEscherichia coliModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16
453DEG|1|I50S RNA helix 95Escherichia coliComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.92008-08-19
461EG0|1|MHELIX 95 OF 23S RRNAEscherichia coliFITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOMEELECTRON MICROSCOPY11.52000-03-06
473EQ4|1|DFragment H95 of the 23S rRNAEscherichia coliModel of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY122008-12-16

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
23DEG|1|IComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.929
37EEN|1|CBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
47EEN|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
57EEN|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.715
67EEN|1|DBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
76ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
86ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
96ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
107EEM|1|ARNA bulged-G motifX-RAY DIFFRACTION2.59326
117EEO|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70114
127EEO|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.70114
134NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
144NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
153DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
167JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
17483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
181Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
195MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8534
205NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
214NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
223DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
237L3R|1|A23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.0130
243S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
253DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
267JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2129
277JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2529
286ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.930
297M3V|1|ARNA bulged-G motifX-RAY DIFFRACTION2.1927
303S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
313DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
325D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
333DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
344Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
35480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
366Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
376Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
386Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
391JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
401JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
411JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
421JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
431JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531
443EQ3|1|DModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY928
453EP2|1|DModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY928
463EQ4|1|DModel of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY1228
471EG0|1|MFITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOMEELECTRON MICROSCOPY11.526