Equivalence class NR_all_94866.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N5P|1|A (rep) | ydaO/yuaA leader | RNA (127-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.99 | 2019-11-27 |
| 2 | 6N5Q|1|A | ydaO/yuaA leader | RNA (128-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.95 | 2019-11-27 |
| 3 | 6N5R|1|A | ydaO/yuaA leader | RNA (125-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 3.08 | 2019-11-27 |
| 4 | 4QK8|1|A | C-di-AMP riboswitch | Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch | X-ray diffraction | 3.05 | 2014-08-06 | ||||
| 5 | 6N5T|1|A | ydaO/yuaA leader | RNA (126-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.79 | 2019-11-27 |
| 6 | 4QKA|1|A | C-di-AMP riboswitch | c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak | X-ray diffraction | 3.2 | 2014-08-06 | ||||
| 7 | 6N5K|1|A | ydaO/yuaA leader | RNA (125-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 3.1 | 2019-11-27 |
| 8 | 6N5N|1|A | ydaO/yuaA leader | RNA (125-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.95 | 2019-11-27 |
| 9 | 6N5S|1|A | ydaO/yuaA leader | RNA (123-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.8 | 2019-11-27 |
| 10 | 6N5O|1|A | ydaO/yuaA leader | RNA (126-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.71 | 2019-11-27 |
| 11 | 6N5L|1|A | ydaO/yuaA leader | RNA (124-MER) | Homo sapiens | Eukarya | RF00379 | Structure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-ray diffraction | 2.85 | 2019-11-27 |
Release history
| Release | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6N5Q|1|A | Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.95 | 127 |
| 2 | 6N5T|1|A | Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.79 | 125 |
| 3 | 6N5N|1|A | Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.95 | 124 |
| 4 | 6N5R|1|A | Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 3.08 | 124 |
| 5 | 6N5K|1|A | Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 3.1 | 124 |
| 6 | 6N5P|1|A | Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.99 | 126 |
| 7 | 6N5S|1|A | Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.8 | 123 |
| 8 | 6N5L|1|A | Structure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.85 | 123 |
| 9 | 6N5O|1|A | Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold | X-RAY DIFFRACTION | 2.71 | 125 |
| 10 | 4QK8|1|A | Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch | X-RAY DIFFRACTION | 3.05 | 120 |
| 11 | 4QKA|1|A | c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak | X-RAY DIFFRACTION | 3.2 | 118 |