#IFECompound(s)RNA source organismTitleMethodResolutionDate
16MDZ|1|E+ 6MDZ|1|C (rep)RNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.42019-08-07
26MDZ|1|F+ 6MDZ|1|DRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*CP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.42019-08-07
36MFR|1|F+ 6MFR|1|DRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.62019-08-07
46NIT|1|E+ 6NIT|1|CRNA (5'-R(P*AP*AP*CP*AP*CP*CP*AP*UP*CP*CP*AP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.82019-08-07
56NIT|1|F+ 6NIT|1|DRNA (5'-R(P*AP*AP*CP*AP*CP*CP*AP*UP*CP*CP*AP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.82019-08-07
66MFR|1|E+ 6MFR|1|CRNA (5'-R(P*AP*AP*AP*CP*AP*CP*CP*AP*UP*UP*UP*UP*CP*AP*CP*AP*CP*UP*CP*CP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*U)-3')Human Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.62019-08-07

Release history

Release3.863.873.883.89
Date2019-08-092019-08-162019-08-232019-08-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16MDZ|1|E+6MDZ|1|CHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.423
26MFR|1|E+6MFR|1|CHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.622
36NIT|1|E+6NIT|1|CHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.821
46NIT|1|F+6NIT|1|DHuman Argonaute2-miR-122 bound to a target RNA with four central mismatches (bu4)X-RAY DIFFRACTION3.820
56MDZ|1|F+6MDZ|1|DHuman Argonaute2-miR-122 bound to a target RNA with two central mismatches (bu2)X-RAY DIFFRACTION3.417
66MFR|1|F+6MFR|1|DHuman Argonaute2-miR-122 bound to a target RNA with three central mismatches (bu3)X-RAY DIFFRACTION3.616