BGSU RNA Site //

Equivalence class NR_all_95556.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14V8U|1|CV (rep)Transfer RNAMRNA, RNAThermus thermophilusBacteriaRF00005Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-ray diffraction3.72014-07-09
24V8U|1|AVTransfer RNAMRNA, RNAThermus thermophilusBacteriaRF00005Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-ray diffraction3.72014-07-09
34V90|1|AVTransfer RNARNA (77-MER), 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3'Thermus thermophilusBacteriaRF00005Thermus thermophilus RibosomeX-ray diffraction2.952014-07-09
43BBV|1|zTransfer RNAtRNA(Phe)Thermus thermophilusBacteriaRF00005The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexElectron microscopy102008-10-21
54V68|1|AWTransfer RNAE-SITE TRNAThermus thermophilusBacteriaRF00005T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.Electron microscopy6.42014-07-09
64WT8|1|D3Transfer RNAA site tNA, E site tNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
73J9Z|1|S7Transfer RNAE-tRNAThermus thermophilusBacteriaRF00005Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GElectron microscopy3.62015-07-01
84V5A|1|AV+ 4V5A|1|AXTransfer RNAP-SITE RNA ASL-PHE, MRNAsynthetic constructSyntheticRF00005Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-ray diffraction3.52014-07-09
94V5A|1|CV+ 4V5A|1|CXTransfer RNAP-SITE RNA ASL-PHE, MRNAsynthetic constructSyntheticRF00005Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-ray diffraction3.52014-07-09
104WT8|1|C3Transfer RNAA site tNA, E site tNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21
114WT8|1|C2Transfer RNAA site tNA, E site tNA, mRNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-ray diffraction3.42015-01-21

Release history

Release2.302.312.322.332.342.352.362.372.382.392.402.412.422.432.44
Date2015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_95556.3NR_all_95556.22.30(10) 4WT8|1|D3, 4WT8|1|C3, 4WT8|1|C2, 4V90|1|AV, 4V8U|1|CV, 4V8U|1|AV, 4V68|1|AW, 4V5A|1|CV+4V5A|1|CX, 4V5A|1|AV+4V5A|1|AX, 3BBV|1|z(1) 3J9Z|1|S7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_95556.3NR_20.0_95556.42.45(11) 3J9Z|1|S7, 4V5A|1|AV+4V5A|1|AX, 4V68|1|AW, 4V8U|1|AV, 4V8U|1|CV, 4WT8|1|C2, 4WT8|1|C3, 4WT8|1|D3, 3BBV|1|z, 4V5A|1|CV+4V5A|1|CX, 4V90|1|AV(0) (3) 5AA0|1|BD, 5AA0|1|BE, 5AA0|1|BC
NR_all_95556.3NR_3.0_95556.42.45(1) 4V90|1|AV(10) 4V5A|1|CV+4V5A|1|CX, 4WT8|1|C2, 4V5A|1|AV+4V5A|1|AX, 4V8U|1|CV, 3J9Z|1|S7, 4V8U|1|AV, 4WT8|1|D3, 3BBV|1|z, 4V68|1|AW, 4WT8|1|C3(0)
NR_all_95556.3NR_3.5_95556.42.45(6) 4WT8|1|D3, 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V90|1|AV, 4WT8|1|C2, 4WT8|1|C3(5) 4V8U|1|CV, 3J9Z|1|S7, 3BBV|1|z, 4V8U|1|AV, 4V68|1|AW(0)
NR_all_95556.3NR_4.0_95556.42.45(9) 4V5A|1|AV+4V5A|1|AX, 4V8U|1|AV, 4V90|1|AV, 4WT8|1|C3, 3J9Z|1|S7, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|CV, 4WT8|1|C2, 4WT8|1|D3(2) 4V68|1|AW, 3BBV|1|z(0)
NR_all_95556.3NR_all_95556.42.45(11) 3BBV|1|z, 3J9Z|1|S7, 4V5A|1|CV+4V5A|1|CX, 4V68|1|AW, 4V8U|1|AV, 4V90|1|AV, 4WT8|1|C2, 4WT8|1|C3, 4V5A|1|AV+4V5A|1|AX, 4V8U|1|CV, 4WT8|1|D3(0) (3) 5AA0|1|BD, 5AA0|1|BE, 5AA0|1|BC

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14WT8|1|C2Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.475
24WT8|1|C3Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.476
34WT8|1|D3Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.476
44V68|1|AWT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.476
53J9Z|1|S7Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.674
63BBV|1|zThe tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY1067
74V8U|1|CVCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
84V8U|1|AVCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
94V5A|1|CV+4V5A|1|CXStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.517
104V5A|1|AV+4V5A|1|AXStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.517
114V90|1|AVThermus thermophilus RibosomeX-RAY DIFFRACTION2.9576