Equivalence class NR_all_95556.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V8U|1|CV (rep) | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 2 | 4V8U|1|AV | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 3 | 4V90|1|AV | Transfer RNA | RNA (77-MER), 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3' | Thermus thermophilus | Bacteria | RF00005 | Thermus thermophilus Ribosome | X-ray diffraction | 2.95 | 2014-07-09 |
| 4 | 3BBV|1|z | Transfer RNA | tRNA(Phe) | Thermus thermophilus | Bacteria | RF00005 | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | Electron microscopy | 10 | 2008-10-21 |
| 5 | 4V68|1|AW | Transfer RNA | E-SITE TRNA | Thermus thermophilus | Bacteria | RF00005 | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | Electron microscopy | 6.4 | 2014-07-09 |
| 6 | 4WT8|1|D3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 7 | 3J9Z|1|S7 | Transfer RNA | E-tRNA | Thermus thermophilus | Bacteria | RF00005 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
| 8 | 4V5A|1|AV+ 4V5A|1|AX | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 | |||
| 9 | 4V5A|1|CV+ 4V5A|1|CX | P-SITE RNA ASL-PHE, MRNA | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 | |||
| 10 | 4WT8|1|C3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 11 | 4WT8|1|C2 | Transfer RNA | A site tNA, E site tNA, mRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_95556.3 | NR_all_95556.2 | 2.30 | (10) 3BBV|1|z, 4WT8|1|D3, 4WT8|1|C3, 4WT8|1|C2, 4V90|1|AV, 4V8U|1|CV, 4V8U|1|AV, 4V68|1|AW, 4V5A|1|CV+4V5A|1|CX, 4V5A|1|AV+4V5A|1|AX | (1) 3J9Z|1|S7 | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WT8|1|C2 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 75 |
| 2 | 4WT8|1|C3 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 |
| 3 | 4WT8|1|D3 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 |
| 4 | 4V68|1|AW | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 76 |
| 5 | 3J9Z|1|S7 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 74 |
| 6 | 3BBV|1|z | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | ELECTRON MICROSCOPY | 10 | 67 |
| 7 | 4V8U|1|CV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 8 | 4V8U|1|AV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 9 | 4V5A|1|CV+4V5A|1|CX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 10 | 4V5A|1|AV+4V5A|1|AX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 11 | 4V90|1|AV | Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 76 |