Equivalence class NR_all_95963.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4YLN|1|9 (rep) | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | ||
| 2 | 4YLO|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | ||
| 3 | 4YLN|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | ||
| 4 | 4YLN|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | ||
| 5 | 4YLO|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | ||
| 6 | 4YLO|1|9 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 |
Release history
| Release | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_95963.1 | NR_20.0_95963.2 | 2.69 | (6) 4YLN|1|3, 4YLN|1|6, 4YLN|1|9, 4YLO|1|6, 4YLO|1|9, 4YLO|1|3 | (0) | (3) 5IPL|1|3, 5IPM|1|3, 5IPN|1|3 |
| NR_all_95963.1 | NR_all_95963.2 | 2.69 | (6) 4YLO|1|6, 4YLN|1|3, 4YLN|1|9, 4YLO|1|3, 4YLO|1|9, 4YLN|1|6 | (0) | (3) 5IPN|1|3, 5IPL|1|3, 5IPM|1|3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4YLN|1|6 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 2 | 4YLN|1|9 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 3 | 4YLO|1|6 | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |
| 4 | 4YLN|1|3 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 5 | 4YLO|1|3 | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |
| 6 | 4YLO|1|9 | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |