Equivalence class NR_all_95963.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5IPL|1|3 (rep) | nascent RNA 4-mer | synthetic construct | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 3.6 | 2016-03-30 | |||
| 2 | 5IPM|1|3 | nascent RNA 4-mer | synthetic construct | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 4.2 | 2016-03-30 | |||
| 3 | 5IPN|1|3 | Nascent RNA 4-mer | synthetic construct | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 4.61 | 2016-03-30 | |||
| 4 | 4YLO|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | |||
| 5 | 4YLN|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | |||
| 6 | 4YLO|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | |||
| 7 | 4YLN|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | |||
| 8 | 4YLN|1|9 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 |
Release history
| Release | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5IPM|1|3 | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 4.2 | 3 |
| 2 | 5IPN|1|3 | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 4.61 | 3 |
| 3 | 5IPL|1|3 | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 3.6 | 3 |
| 4 | 4YLN|1|6 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 5 | 4YLN|1|9 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 6 | 4YLO|1|6 | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |
| 7 | 4YLN|1|3 | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 |
| 8 | 4YLO|1|3 | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |