BGSU RNA Site //

Equivalence class NR_all_96683.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15GMF|1|H (rep)RNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.52016-11-02
23S4G|1|C+ 3S4G|1|BRNA (5'-R(P*UP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*A)-3')Low Resolution Structure of STNV complexed with RNAX-RAY DIFFRACTION62011-08-03
35GMG|1|CRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.62016-11-02
45GMG|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.62016-11-02
53IE1|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852009-08-04
61NB7|1|E5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.92003-03-25
75GMF|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.52016-11-02
83IE1|1|FRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852009-08-04
91NB7|1|F5'-R(*UP*UP*UP*U)-3'HC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.92003-03-25
105GMF|1|FRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.52016-11-02
115GMF|1|GRNA (5'-R(P*UP*UP*UP*U)-3')Homo sapiensEukaryaCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.52016-11-02
123IE1|1|HRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852009-08-04
132QQP|1|RRNA (5'-R(*UP*UP*UP*U)-3')Crystal Structure of Authentic Providence VirusX-RAY DIFFRACTION3.82009-01-20
144DR7|1|V5'-R(*UP*UP*UP*U)-3'Thermus thermophilusBacteriaCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.752012-11-14
153IE1|1|GRNA (5'-R(P*UP*UP*UP*U)-3')Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852009-08-04

Release history

Release2.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_96683.1NR_all_85948.12.100(9) 3IE1|1|F, 3IE1|1|E, 4DR7|1|V, 2QQP|1|R, 3S4G|1|C+3S4G|1|B, 1NB7|1|F, 3IE1|1|H, 1NB7|1|E, 3IE1|1|G(6) 5GMF|1|E, 5GMG|1|D, 5GMG|1|C, 5GMF|1|H, 5GMF|1|G, 5GMF|1|F(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_96683.1NR_all_96683.23.0(15) 5GMF|1|E, 5GMG|1|C, 1NB7|1|F, 3IE1|1|G, 4DR7|1|V, 5GMF|1|H, 1NB7|1|E, 3IE1|1|F, 5GMF|1|G, 3IE1|1|E, 3S4G|1|C+3S4G|1|B, 5GMF|1|F, 5GMG|1|D, 2QQP|1|R, 3IE1|1|H(0) (4) 2ZDE|1|F, 2ZDE|1|E, 2ZDE|1|H, 2ZDE|1|G

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15GMG|1|DCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.64
25GMF|1|HCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
35GMF|1|FCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
45GMF|1|ECrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
55GMF|1|GCrystal structure of monkey TLR7 in complex with guanosine and polyUX-RAY DIFFRACTION2.54
65GMG|1|CCrystal structure of monkey TLR7 in complex with loxoribine and polyUX-RAY DIFFRACTION2.64
73IE1|1|HCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
83IE1|1|ECrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
93IE1|1|FCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.854
103S4G|1|C+3S4G|1|BLow Resolution Structure of STNV complexed with RNAX-RAY DIFFRACTION64
114DR7|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin boundX-RAY DIFFRACTION3.754
122QQP|1|RCrystal Structure of Authentic Providence VirusX-RAY DIFFRACTION3.84
133IE1|1|GCrystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNAX-RAY DIFFRACTION2.852
141NB7|1|FHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94
151NB7|1|EHC-J4 RNA polymerase complexed with short RNA template strandX-RAY DIFFRACTION2.94