Equivalence class NR_all_98371.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8DH1|1|G (rep) | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 2 | 8DH1|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 3 | 8DH1|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 4 | 8DH0|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 5 | 8DH0|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 6 | 8DH4|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 7 | 8DH0|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 8 | 8DH4|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 9 | 8DH1|1|N | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-ray diffraction | 2.65 | 2023-02-01 | |||
| 10 | 8DH4|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 11 | 8DH5|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 12 | 8DH5|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 13 | 8DH5|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 14 | 8DH5|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-ray diffraction | 2.85 | 2023-02-01 | |||
| 15 | 8DH4|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-ray diffraction | 2.8 | 2023-02-01 | |||
| 16 | 8DH0|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 17 | 8DH3|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 18 | 8DH2|1|C | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 19 | 1S0V|1|F | 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3' | Structural basis for substrate selection by T7 RNA polymerase | X-ray diffraction | 3.2 | 2004-02-24 | ||||
| 20 | 8DH3|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 21 | 8DH3|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 22 | 8DH3|1|O | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dPa | X-ray diffraction | 3 | 2023-02-01 | |||
| 23 | 8DH2|1|G | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 24 | 8DH2|1|K | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 25 | 8DH2|1|N | RNA | synthetic construct | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-ray diffraction | 2.9 | 2023-02-01 | |||
| 26 | 1S0V|1|O | 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3' | Structural basis for substrate selection by T7 RNA polymerase | X-ray diffraction | 3.2 | 2004-02-24 | ||||
| 27 | 1S0V|1|I | 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3' | Structural basis for substrate selection by T7 RNA polymerase | X-ray diffraction | 3.2 | 2004-02-24 | ||||
| 28 | 1S0V|1|L | 5'-R(*AP*AP*CP*U*GP*CP*GP*GP*CP*GP*AP*U)-3' | Structural basis for substrate selection by T7 RNA polymerase | X-ray diffraction | 3.2 | 2004-02-24 | ||||
| 29 | 1H38|1|F | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 30 | 1H38|1|I | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 31 | 1H38|1|L | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 | |||
| 32 | 1H38|1|O | 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' | Escherichia virus T7 | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-ray diffraction | 2.9 | 2002-11-20 |
Release history
| Release | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_98371.1 | NR_all_71520.1 | 3.268 | (8) 1H38|1|O, 1S0V|1|O, 1H38|1|F, 1S0V|1|F, 1H38|1|L, 1S0V|1|L, 1H38|1|I, 1S0V|1|I | (24) 8DH3|1|K, 8DH4|1|C, 8DH5|1|K, 8DH1|1|K, 8DH3|1|G, 8DH3|1|O, 8DH5|1|G, 8DH1|1|G, 8DH5|1|C, 8DH1|1|C, 8DH3|1|C, 8DH4|1|O, 8DH0|1|O, 8DH2|1|N, 8DH4|1|K, 8DH0|1|K, 8DH2|1|K, 8DH4|1|G, 8DH0|1|G, 8DH2|1|G, 8DH0|1|C, 8DH2|1|C, 8DH5|1|O, 8DH1|1|N | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8DH2|1|K | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 |
| 2 | 8DH1|1|N | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 |
| 3 | 8DH2|1|N | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 |
| 4 | 8DH5|1|O | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 |
| 5 | 8DH4|1|O | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 |
| 6 | 8DH3|1|O | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 |
| 7 | 8DH3|1|G | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 |
| 8 | 8DH3|1|C | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 9 |
| 9 | 8DH4|1|C | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 9 |
| 10 | 8DH2|1|C | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 |
| 11 | 8DH5|1|C | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 9 |
| 12 | 8DH1|1|C | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 |
| 13 | 8DH0|1|C | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 |
| 14 | 8DH0|1|O | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 |
| 15 | 8DH0|1|K | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 |
| 16 | 8DH1|1|K | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 |
| 17 | 8DH1|1|G | T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair | X-RAY DIFFRACTION | 2.65 | 8 |
| 18 | 8DH2|1|G | T7 RNA polymerase elongation complex with unnatural base dDs-ATP mismatch | X-RAY DIFFRACTION | 2.9 | 8 |
| 19 | 8DH5|1|G | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 |
| 20 | 8DH4|1|G | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 |
| 21 | 8DH0|1|G | T7 RNA polymerase elongation complex with unnatural base dDs | X-RAY DIFFRACTION | 2.9 | 8 |
| 22 | 8DH3|1|K | T7 RNA polymerase elongation complex with unnatural base dPa | X-RAY DIFFRACTION | 3 | 8 |
| 23 | 8DH5|1|K | T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch | X-RAY DIFFRACTION | 2.85 | 8 |
| 24 | 8DH4|1|K | T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair | X-RAY DIFFRACTION | 2.8 | 8 |
| 25 | 1S0V|1|F | Structural basis for substrate selection by T7 RNA polymerase | X-RAY DIFFRACTION | 3.2 | 8 |
| 26 | 1S0V|1|I | Structural basis for substrate selection by T7 RNA polymerase | X-RAY DIFFRACTION | 3.2 | 8 |
| 27 | 1S0V|1|O | Structural basis for substrate selection by T7 RNA polymerase | X-RAY DIFFRACTION | 3.2 | 8 |
| 28 | 1H38|1|I | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 |
| 29 | 1H38|1|O | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 |
| 30 | 1H38|1|L | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 |
| 31 | 1H38|1|F | Structure of a T7 RNA polymerase elongation complex at 2.9A resolution | X-RAY DIFFRACTION | 2.9 | 8 |
| 32 | 1S0V|1|L | Structural basis for substrate selection by T7 RNA polymerase | X-RAY DIFFRACTION | 3.2 | 8 |