#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52019-06-12
47MPL|1|D5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
57MPL|1|H5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
67MPL|1|B5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
77MPL|1|J5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
87MPL|1|F5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
97MPL|1|N5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
107MPL|1|L5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
117MPL|1|P5'-phosphorylated GGBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82021-09-15
126IJ2|1|FRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
136IJ2|1|GRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
146IJ2|1|HRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
156IJ2|1|ERNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72019-10-09
163U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
173U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322011-10-12
187EH1|1|IRNA (5'-R(*GP*G)-3')Thermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-RAY DIFFRACTION2.92021-07-14
197MPQ|1|R5'-phosphorylated GGBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-RAY DIFFRACTION2.352021-09-15
205UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
215UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12017-07-05
227EH2|1|RRNA (5'-R(*GP*G)-3')Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342021-07-14
237EH2|1|IRNA (5'-R(*GP*G)-3')Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342021-07-14
244X4U|1|HRNA (5'-D(*GP*G)-3')Homo sapiensCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-RAY DIFFRACTION2.72015-02-11
254AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
266OY5|1|IRNA (5'-D(*(GTP))-R(P*G)-3')Thermus thermophilusX-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 minX-RAY DIFFRACTION3.12019-06-05
276OWL|1|BRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26
286OWL|1|CRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION22020-02-26
294AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012013-01-09
304LQ3|1|R5'-R(P*GP*G)-3'Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-RAY DIFFRACTION2.62014-02-12
316S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION22019-08-28
327MPU|1|D5'-phosphorylated GGBrucella melitensis NrnC bound to pGGX-RAY DIFFRACTION1.722021-09-15
337MQB|1|BRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
347MQB|1|DRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
357MQB|1|FRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
367MQB|1|HRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
377MQB|1|JRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
387MQB|1|LRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
397MQB|1|NRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
407MQB|1|PRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252021-09-15
417MQC|1|BRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
427MQC|1|DRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
437MQC|1|FRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
447MQC|1|HRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
457MQC|1|JRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
467MQC|1|LRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
477MQC|1|NRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
487MQC|1|PRNA (5'-R(P*GP*G)-3')Bartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642021-09-15
496YMW|1|CRNA (pppGpG)Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complexELECTRON MICROSCOPY3.712020-12-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16IJ2|1|ECrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
27MPQ|1|RBartonella henselae NrnC cleaving pGG in the presence of Mn2+X-RAY DIFFRACTION2.352
35UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
45UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
56OWL|1|BRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
66OY5|1|IX-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 minX-RAY DIFFRACTION3.11
77EH2|1|IThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342
87EH2|1|RThermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primerX-RAY DIFFRACTION3.342
96IJ2|1|HCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
107EH1|1|IThermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPPX-RAY DIFFRACTION2.92
117MQC|1|PBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
127MQB|1|DBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
137MQB|1|HBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
144LQ3|1|RCrystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDSX-RAY DIFFRACTION2.62
154X4U|1|HCrystal structure of the A.fulgidus CCA-adding enzyme in complex with a human MenBeta minihelix ending in CCACCX-RAY DIFFRACTION2.72
164AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
174AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
183U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
193U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
207MPU|1|DBrucella melitensis NrnC bound to pGGX-RAY DIFFRACTION1.722
217MQC|1|JBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
227MQC|1|BBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
237MQB|1|LBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
247MQB|1|NBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
257MQC|1|HBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
267MQB|1|BBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
277MQB|1|PBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
287MQB|1|JBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
297MQC|1|DBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
306OWL|1|CRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
317MQB|1|FBartonella henselae NrnC bound to pGG. D4 SymmetryELECTRON MICROSCOPY3.252
326S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
336YMW|1|CCryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complexELECTRON MICROSCOPY3.711
347MQC|1|FBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
357MQC|1|LBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
367MQC|1|NBartonella henselae NrnC bound to pGG. C1 reconstruction.ELECTRON MICROSCOPY3.642
377MPL|1|DBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
387MPL|1|NBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
397MPL|1|BBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
407MPL|1|PBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
416N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52
426N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
437MPL|1|LBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
446IJ2|1|GCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
457MPL|1|HBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
467MPL|1|JBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
477MPL|1|FBartonella henselae NrnC bound to pGGX-RAY DIFFRACTION1.82
486IJ2|1|FCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
496N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432