Equivalence class NR_all_99632.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|1 (rep) | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 2 | 6FYX|1|1 | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 3 | 1YFG|1|A | Transfer RNA | YEAST INITIATOR TRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | YEAST INITIATOR TRNA | X-ray diffraction | 3 | 1997-09-03 |
| 4 | 5OA3|1|1 | Transfer RNA | initiator Met-tRNA-i | Saccharomyces cerevisiae | Eukarya | RF00005 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 5 | 3J81|1|1 | Met-tRNAi, mRNA | CryoEM structure of a partial yeast 48S preinitiation complex | Electron microscopy | 4 | 2014-11-05 | ||||
| 6 | 3JAQ|1|1 | Transfer RNA | Met-tRNAi, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in open conformation | Electron microscopy | 6 | 2015-08-12 |
Release history
| Release | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3J81|1|1 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 74 |
| 2 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 |
| 3 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 |
| 4 | 3JAQ|1|1 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 6 | 64 |
| 5 | 1YFG|1|A | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 64 |
| 6 | 5OA3|1|1 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 75 |