1IBM Summary
- Structure Title
- 1IBM Summary
- Authors
- Ogle, J.M., Brodersen, D.E., Clemons Jr., W.M., Tarry, M.J., Carter, A.P., Ramakrishnan, V.
- Release Date
- 2001-05-04
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
- Chains
-
- 4 RNA chains from Thermus thermophilus,
- 20 other chains
- Compounds
- 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, 30S RIBOSOMAL PROTEIN S4, 30S RIBOSOMAL PROTEIN S5, 30S RIBOSOMAL PROTEIN S6, 30S RIBOSOMAL PROTEIN S7, 30S RIBOSOMAL PROTEIN S8, 30S RIBOSOMAL PROTEIN S9, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, 30S RIBOSOMAL PROTEIN S12, 30S RIBOSOMAL PROTEIN S13, 30S RIBOSOMAL PROTEIN S14, 30S RIBOSOMAL PROTEIN S15, 30S RIBOSOMAL PROTEIN S16, 30S RIBOSOMAL PROTEIN S17, 30S RIBOSOMAL PROTEIN S18, 30S RIBOSOMAL PROTEIN S19, 30S RIBOSOMAL PROTEIN S20, 30S RIBOSOMAL PROTEIN THX, P-SITE MESSENGER RNA FRAGMENT, ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT
Pairwise Interactions
Interactions annotated by FR3D:- 675 base-pairs
- 1,608 base-stacking
- 692 base-phosphate
- 105 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 1IBM contains:- 64 internal loops from 0 motif groups
- 32 hairpin loops from 0 motif groups
- 12 three-way junctions
3D Redundancy
1IBM has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_65795.67 (1)
- NR_20.0_45930.3 (1)
- NR_20.0_31741.1 (1)
- NR_3.5_65795.67 (1)
- NR_3.5_45930.3 (1)
- NR_3.5_31741.1 (1)
- NR_4.0_65795.67 (1)
- NR_4.0_45930.3 (1)
- NR_4.0_31741.1 (1)
- NR_all_65795.67 (1)
- NR_all_45930.3 (1)
- NR_all_31741.1 (1)
Similar structures
4LFB 4V9I 5VPO 4KVB 6N9E 1VVJ 4OX9 5VPO 4L71 6B4V 4LFZ 5WNR 4V83 6B4V 4P70 4V8A 1HNX 6N9F 4V67 4V9K 4V9K 7AZS 4V97 4V9I 6N9F 6N9E 4LSK 5CZP 1VVJ 4LT8 4LT8 5CZP 7AZS 4V9Q 4V7L 6N1D 4P70 4V63 4V8G 4V9L 4V84 4LEL 5D8B 4V9M 5DOX 4V9M 6UCQ 4V5G 4V5G 4V63 4LEL 4V5K 4V7P 4V7P 4V7Y 4V8A 6N1D 4L71 4LFZ 4V9Q 2UXD 1N33 4V67 6UCQ 4V8J 4XEJ 4V8J 4XEJ 4V7Y 4V9L 5DOX 6XQE 4V5Q 6CAS 6CAR 1VY7 7JQL 4V7K 4V5K 4TUC 4V5E 2UXB 5V8I 4WQY 4P6F 4TUD 4V5C 4WRO 4V9A 4V51 4WQU 1VY6 4WQF 4V8C 4TUA 4V8Q 7JQL 6CAO 6GSK 4V5D 1HNZ 4TUD 4V7K 6GSK 4TUA 7LH5 4TUE 4V9A 2HHH 4LSK 4YY3 4TUB 6XQE 4V8H 7LH5 4V83 4WQY 4V7L 5F8K 4V97 4V8F 4TUC 4V8F 4TUB 4P6F 4V87 4V8E 1IBK 4V5D 4TUE 1N32 3T1H 3T1Y 4V87 5F8K 4V8E 4V5E 1XNQ 4V90 4V8H 4V8G 4V84 6OJ2 7V2Q 6GZQ 6NWY 6NWY 7V2O 7V2P 6BUW 6BUW 6NDK 1I94 6BZ8 6BZ7 6BZ8 6BZ7 6NDK 6OXI 6OXI 7V2M 6BZ6 5J30 6OJ2 6OF6 6OXA 5J30 6OF6 6NUO 6OXA 6NUO 7V2L 1FKA 6NSH 5UQ7 6NSH 5ZLU 6Q95 5LMR 5LMV 5LMS 5IMQ 5LMP 1I97 4V68 1JGQ 4V42 1JGO 5IMR 4V5N 4V5M 1JGP 5A9Z 2F4V 6GZX 5LMO 5OT7 7V2N 6O3M 6O3M 5LMN 6OSI 6OSI 6GZZ 6GZZ 1I96 1I95 5LMQ 5LMU 5LMT 6GZX 5AA0 6BZ6 4V4J 4V4R 4V4T 4V4S 4V4X 4V4Z 4V4Y 4V4P 4B3M 4B3T 4B3R 6GSJ 6GSJ 4B3S 5BR8 1J5E 1N34 4V8O 1N36 5D8B 4V7W 1XMO 4V7X 4V7X 2E5L 4V7W 4V7Z 4W29 4V7Z 4V5A 4W29 4V5A 2ZM6 4V4I 4AQY 4V8X 6BOK 6BOH 6BOH 5VPP 5VPP 5J3C 5J3C 6OPE 6OTR 6OTR 6ORD 5UQ8 6ORD 6OPE 6NTA 6BOK 7DUH 7DUJ 4V6A 4V6A 4V8U 4V8U 4V9N 4V8X 4V8N 4V8N 4V9J 4V9N 4V9J 6GSL 6GSL 7DUK 7DUG 6NTA 1HR0 7RQE 5J8B 4Z8C 6CAP 5HCR 4DV4 6XHY 7U2H 6QNR 4WSD 5NDK 4Z8C 5WIS 6CAQ 4V8I 7AZO 5DFE 6QNR 5J4B 5EL6 4LFA 5IB8 4DV5 5IB7 6CFJ 6OF1 6CFK 4DV0 6MPI 5J4C 5W4K 4DV3 7RQC 5EL6 5DFE 5IB8 4WT8 7RQC 6XHV 4LNT 4DR4 4V8D 4V6G 5J4C 5EL4 6FKR 4JV5 4NXN 4W2I 7MD7 5HD1 6CFJ 4JI2 4V5F 2UXC 5NDK 7AZO 6NY6 4WPO 6OF1 4K0K 6XHW 1VY4 5EL4 5HCR 7U2I 6ND5 4V6G 4Z3S 4DUZ 7U2J 5WNV 4V9H 4DV6 4JI7 5FDV 4X62 7DUL 7RQB 5FDV 4DV7 5FDU 5FDU 5WNU 4DR3 4JYA 5HCQ 4KHP 4DR5 4Y4O 4DR6 4LF8 4LF7 4X65 5WNT 4JI1 4X64 4DUY 4DR2 4LF9 4Y4O 4LF6 7RQB 7DUI 4LF4 4JI3 6CAE 5J4B 5E81 4X66 7RQ8 5EL7 6CFK 5E81 6CFL 5EL7 4JI8 6XHX 4WQ1 6XHY 6CAE 4DR1 6MPF 5IB7 4WQR 5IBB 4JI6 5WNP 5IBB 6CFL 4LFC 5HCQ 4JI0 7RQE 6XHX 7U2H 4WQ1 4WSM 7U2J 4WSM 4WQR 4LNT 6C5L 4V7J 4ZER 4V9R 4ZER 4WT1 5WIT 4V9R 5EL5 6ND6 4W2F 6UO1 7RQ9 4WZO 1HNW 4YPB 4WQU 6DTI 4V9S 4V8B 4V95 7RQ9 4V9S 7RQA 4WU1 1VY5 4WU1 7JQM 6XQD 7RQA 4WR6 4V7J 6XQD 4YZV 4V5J 4WZO 1XNR 4V5S 4V6F 7JQM 4ZSN 6ND6 5NDJ 4L47 5V8I 1XMQ 1VY5 4V6F 4V51 4V7M 4L47 4WRO 5NDJ 3OTO 4Y4P 4V5Q 4V5P 4V5S 1VY7 6UO1 4ZSN 4YPB 4V5L 4YZV 4WQF 1VY6 4V5C 4V5P 4V5J 4V8C 6C5L 7RQ8 5IWA 6MKN 5EL5 6XHV 4WSD 5HCP 5HAU 4NXM 4DV2 4W2G 4GKK 5E7K 4V5R 4WT8 6XHW 5E7K 4Z3S 4V5F 5HCP 4W2I 5W4K 6QNQ 4LF5 4W2G 4JI4 4WPO 4V8D 4DV1 6FKR 4V5R 6QNQ 7RQD 6O97 5HAU 5HD1 5DOY 1FJG 5WNQ 1VY4 7MD7 5WNS 4WRA 4V9B 4WR6 1IBL 4V9B 4WRA 5DOY 4DR7 4W2E 4W2F 4W4G 4JI5 4W2H 6ND5 4V95 4WT1 4V7M 4V8I 4W4G 4W2H 7U2I 5WIS 4GKJ 7RQD 4V8B 4Y4P 5WIT 6O97Structures from NR_all_65795.67