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Structure Title
4DV5 Summary
Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.
Release Date
Experimental technique
3.7 Å
  • 1 RNA chain from Thermus thermophilus
  • 20 other chains
16S rRNA, ribosomal protein S2, ribosomal protein S3, ribosomal protein S4, ribosomal protein S5, ribosomal protein S6, ribosomal protein S7, ribosomal protein S8, ribosomal protein S9, ribosomal protein S10, ribosomal protein S11, ribosomal protein S12, ribosomal protein S13, ribosomal protein S14, ribosomal protein S15, ribosomal protein S16, ribosomal protein S17, ribosomal protein S18, ribosomal protein S19, ribosomal protein S20, ribosomal protein THX

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 4DV5 contains:
  • 67 internal loops from 0 motif groups
  • 32 hairpin loops from 0 motif groups
  • 13 three-way junctions

3D Redundancy

4DV5 belongs to the following equivalence classes in the current representative set:

Similar structures

4LFB 4V67 6N9F 4V9I 5VPO 4KVB 6N9E 1VVJ 4OX9 5VPO 4L71 6B4V 4LFZ 5WNR 4V7L 4V9Q 5CZP 4TUC 4V8G 4V9K 4V9K 4V97 4V9I 6N9F 6N9E 4LSK 5CZP 1VVJ 4LT8 4LT8 4V83 6B4V 4P70 4V8J 4XEJ 4V7Y 4V9L 4V7Y 4V7P 4V7P 4V63 4V8G 4V9L 4V84 4LEL 5D8B 4XEJ 4V8J 4V8A 1HNX 6N1D 4P70 4V8A 6N1D 4L71 4LFZ 4V9Q 2UXD 1N33 4V67 6UCQ 4V9M 4V8F 1VY6 4V9A 6CAS 6CAR 1VY7 4V7K 4V5K 4TUC 4V5E 2UXB 5V8I 4WQY 4P6F 4TUD 4V51 4WQU 1IBM 4WQF 4V8C 4TUA 4V8Q 6CAO 6GSK 4V5D 1HNZ 4TUD 4V7K 6GSK 4TUA 4V5C 4WRO 4TUE 4P6F 4TUB 4V8F 4V9A 2HHH 4LSK 4YY3 4TUB 4V8H 4V83 4WQY 4V7L 5F8K 4V8H 4V90 4V87 4V8E 1IBK 4V5D 4TUE 1N32 3T1H 3T1Y 4V87 5F8K 4V8E 4V5E 1XNQ 4V97 5DOX 5VPP 2JL7 5UQ7 6OXI 6OXI 6GZQ 6BUW 6BUW 6NDK 1I94 6BZ8 6BZ7 6BZ8 6BZ7 2JL5 1FKA 5VPP 4BTC 5J3C 5J3C 6OTR 6OTR 5UQ8 6BZ6 6BZ6 5J30 6OXA 5J30 6OXA 6NDK 5ZLU 6Q95 5LMS 5IMQ 5LMP 1I97 4V68 1JGQ 4V42 1JGO 5IMR 4V5N 4V5M 1JGP 5A9Z 5LMV 5LMR 5OT7 5LMN 6GZZ 6GZZ 1I96 1I95 5LMQ 5LMU 5LMT 6GZX 5LMO 6GZX 2F4V 5AA0 6BOH 4V9M 4V7W 4V7Z 4W29 4V7Z 4V5A 4W29 4V5A 2ZM6 4V4I 1N36 4V8O 1N34 4V4R 2E5L 4V7X 6UCQ 4V5G 4V5G 4V63 4LEL 4V5K 5DOX 4V84 4V4J 5D8B 4V7W 1XMO 4V7X 4V4T 4V4S 4V4X 4V8U 4V8U 4V9N 4V8X 4V8N 4V8N 4V9J 4V9N 4V9J 6GSL 6GSL 6BOK 6BOK 4V6A 4V6A 4V4Z 4V4Y 4V4P 4B3M 4B3T 4B3R 6GSJ 6GSJ 4B3S 5BR8 1J5E 4AQY 4V8X 6BOH 6CAP 5HCR 4DV4 6QNR 4WSD 5NDK 4Z8C 5WIS 6CAQ 4V8I 5DFE 5IB8 2UXC 4Z8C 5J8B 5IB7 6CFJ 6OF1 6CFK 4DV0 6MPI 5J4C 5W4K 4DV3 5EL6 5J4B 6QNR 5DFE 5NDK 6NY6 4WPO 4V6G 5J4C 5EL4 6FKR 4JV5 4NXN 4W2I 5HD1 4DUZ 4LNT 5HCP 4W2I 5W4K 4V8D 4DR4 6OF1 4K0K 1VY4 5EL4 5HCR 6ND5 4V6G 4Z3S 4V5F 4JI2 6CFJ 4WT8 4LNT 6QNQ 5IB8 5WNV 4KHP 4V9H 4DV6 4JI7 5FDV 4X62 5FDV 4DV7 5FDU 5FDU 5WNU 4DR3 4JYA 4DR5 4Y4O 4DR6 4LF8 4LF7 4X65 5WNT 4JI1 4X64 4DUY 4DR2 4LF9 4Y4O 4LF6 4LF4 5HCQ 4JI3 6CAE 5E81 4X66 5EL7 6CFK 5E81 6CFL 5EL7 4JI8 4WQ1 6CAE 4DR1 4WQR 5EL6 5J4B 6MPF 5IBB 4JI6 5WNP 5IBB 6CFL 4LFC 5HCQ 4JI0 4WQ1 4WSM 4WSM 4WQR 5IB7 4LFA 4LF5 4V9S 4V9R 5EL5 6ND6 4W2F 6UO1 4WZO 1HNW 4YPB 4V5J 4WZO 4Y4P 4V5Q 4V5P 5WIT 4WT1 4WU1 1VY5 4WU1 4WR6 4V7J 4YZV 4V9S 6DTI 4WQU 4V7J 4ZER 4V9R 4ZER 4V5S 1VY7 6UO1 4ZSN 6ND6 5NDJ 4L47 5V8I 1XMQ 1VY5 4V6F 4V51 4V7M 4L47 4V8C 1HR0 4V6F 4V5S 4ZSN 4YPB 4V5L 4YZV 4WQF 1VY6 4V5C 4V5P 4V5J 3OTO 5NDJ 4WRO 1XNR 4V5Q 4V95 4W2G 5HCP 5HAU 4NXM 4DV2 4W2G 4GKK 5E7K 4V5R 4WT8 5HAU 5HD1 4W2H 6ND5 4WSD 5EL5 4JI4 4WPO 4V8D 4DV1 6FKR 4V5R 6QNQ 6O97 4V5F 4Z3S 5E7K 5IWA 6MKN 4V95 4WT1 4V7M 5WNS 4WRA 4V9B 4WR6 1IBL 4V9B 4WRA 5DOY 4DR7 4W2E 6O97 6C5L 6C5L 1VY4 5WNQ 4V8I 4W4G 4W2H 5WIS 4GKJ 4V8B 4Y4P 5WIT 4JI5 4W4G 4W2F 5DOY 1FJG 4V8B
Structures from NR_all_65795.52