- Structure title
- State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Authors
- Release date
- 2017-12-27
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
- Chains
-
3 RNA chains from
Saccharomyces cerevisiae
-
54 other chains
- Nucleic acid compounds
25S ribosomal RNA, 5.8S ribosomal RNA, Internal Transcribed Spacer 2
- Other compounds
Protein MAK16, Ribosomal RNA-processing protein 1, Ribosome biogenesis protein NSA1, Ribosome biogenesis protein BRX1, 60S ribosomal protein L3, 60S ribosomal protein L4-A, ATP-dependent RNA helicase HAS1, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, Nucleolar complex-associated protein 3, rRNA-processing protein EBP2, Proteasome-interacting protein CIC1, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, Ribosome assembly factor MRT4, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, Nucleolar GTP-binding protein 1, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-B, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosome subunit biogenesis protein NIP7, Ribosome biogenesis protein ERB1, Pescadillo homolog, Ribosome biogenesis protein 15, Ribosome biogenesis protein YTM1, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, Ribosome biogenesis protein NSA2, Nuclear GTP-binding protein NUG1, Ribosome biogenesis protein RLP7, Ribosome biogenesis protein RLP24, Nucleolar protein 16, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, Ribosome production factor 1, Eukaryotic translation initiation factor 6, UPF0642 protein YBL028C
Pairwise Interactions
Interactions annotated by
FR3D:
View all
RNA 3D Motifs
In the current release of the
RNA 3D Motif Atlas, 6EM5 contains:
-
0 hairpin loops from 0 motif groups
-
0 internal loops from 0 motif groups
-
0 junction loops from 0 motif groups
More
3D Redundancy
6EM5 has chains which belong to the following equivalence classes in the current representative set:
Similar structures
None found
