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Structure Title
6XDQ Summary
Release Date
Experimental technique
3.7 Å
  • 6 RNA chains from synthetic construct, Escherichia coli
  • 62 other chains
50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, NT DNA, T DNA, mRNA with 30 nt long spacer, 50S ribosomal protein L10, E-site and P-site tRNA (fMet), DNA-directed RNA polymerase subunit beta, Transcription termination/antitermination protein NusG, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega, Transcription termination/antitermination protein NusA, E-site and P-site tRNA (fMet), 30S ribosomal protein S18, 16S rRNA, 30S ribosomal protein S20, 30S ribosomal protein S21, 30S ribosomal protein S2, 30S ribosomal protein S1, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S19, 30S ribosomal protein S13, 50S ribosomal protein L11, 50S ribosomal protein L7/L12, 23S rRNA, 50S ribosomal protein L27, 50S ribosomal protein L28, 5S rRNA, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L2, 50S ribosomal protein L32, 50S ribosomal protein L3, 50S ribosomal protein L33, 50S ribosomal protein L4, 50S ribosomal protein L34, 50S ribosomal protein L5, 50S ribosomal protein L35, 50S ribosomal protein L6, 50S ribosomal protein L36, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 6XDQ contains:
  • 185 internal loops from 0 motif groups
  • 108 hairpin loops from 0 motif groups
  • 26 three-way junctions

3D Redundancy

6XDQ has chains which belong to the following equivalence classes in the current representative set:

Similar structures

5L4O 6WD2 6WDM 5UYL 6WD5 6ZTJ 6WD5 6BUW 6ZTM 6WD3 5LZA 5WF0 5WF0 7JSZ 6WDJ 6WD6 5UYL 6WD3 6BU8 7JT2 6BU8 5U4I 5UQ7 5U4I 5MDY 6X7F 6X7F 6OXI 6OXI 6BUW 6WDK 6WDK 6WDM 6WDL 7JSS 6WD8 6WD9 6DNC 6DNC 6WD6 6OSQ 6OSK 6BZ7 5L3P 3JCJ 6SWC 6Q95 6WDA 7JSW 5UYQ 6VU3 6VYQ 6WDL 6WD8 6WDJ 6WD9 6WD4 6WD4 5ZEU 6WD2 7JT3 6VYS 6VYQ 6VU3 6VYS 6GXM 5WFS 5WE4 6ZTP 6ZU1 6ZTO 5U9G 6WNW 5UYM 5U9F 6WDD 5UQ8 5U9G 5U9F 5UYM 6BZ6 5WE4 6BZ6 6ORD 5WDT 5WFS 6OPE 6OPE 5J3C 6ORE 6OTR 6OTR 6OTR 6X7K 6X7K 6ORD 6OTR 5MDV 5MDW 6X6T 6X6T 6OFX 6WDG 2FMT 6OXA 5ZEB 5ZEP 6WDF 6OG7 3JCE 6OGI 5LZD 5WE6 5WFK 5WFK 6YEF 2FMT 6WD1 6OJ2 6OF6 6WDD 6C4I 6C4I 6OXA 6OXA 5J30 5J30 6OF6 6OJ2 5MDZ 7JT1 6OXA 5WE6 6XGF 6VYW 6VYU 6VZ7 6XII 4V7B 3J5S 6H58 6H58 6XIJ 6XIJ 6VZ5 6VZ3 6VZ5 6VZ3 6XII 6VYU 6VYW 6XGF 5LZB 5LMV 3JBO 5LMQ 3J77 3J78 3J78 5LMS 5JBH 6SW9 5JB3 4V69 6VZ7 4V6V 6VYY 6VYZ 4V6S 4V6P 6VYT 6VYT 5ME1 4V6O 4V79 4V73 5ME0 4V70 4V74 4V77 4V76 4V71 4V72 5ZEY 4V6N 6VYX 6VYY 6VYX 6VYZ 6VZ2 6VZ2 4V6T 3DEG 4V6R 4V6Q 1EG0 4V6Y 4V6Z 4V75 4V78 5UYQ 6GXO 6NDK 5KPX 6WD7 6YSI 5KPS 6OGF 3J9Y 5UYN 5UYN 6WDI 6WDB 6WDI 6O9K 5UYP 5UYK 6WD7 6GWT 6WDA 6BZ8 6BZ8 6NDK 6VYR 6VYR 6BZ7 6ORL 5KPW 5KPS 5UYK 5UYP 6GXN 5IQR 6BZ7 6WDB 6OT3 5KPV 6OST 5LMU 5LZF 3JCN 6YS5 3JBN 6XDR 6XDR 6X9Q 6X9Q 6YTF 5LZC 6WDH 6WDH 6OGG 5KPW 6BZ8 6OUO 6BZ7 5KPV 6BZ8 5KPX 6VZJ 6VZJ 6ZTL 6WDC 6O7K 6WDC 6ZTN 5U4J 6XQD 5HD1 4V9S 4W2I 6ND5 5E7K 1VY7 4Z3S 4YZV 1VY4 4W2F 4V8Q 1VY5 4V51 4WPO 6QNQ 5EL5 5WIT 4V9S 5IB8 6XHV 4Y4P 4W2G 4WR6 6O97 4WR6 3CW5 5EL4 5HCP 4W4G 5DOY 4ZER 7JQL 4ZSN 4YPB 1VY6 4Z3S 4ZER 6UO1 6UO1 4ZSN 1VY6 4WQY 5DOY 4V8F 4WRO 5WIT 4V5C 5F8K 7JQM 4Y4P 6O97 7JQM 4W4G 7JQL 4V9R 4V9R 4WZO 5EL4 4W2F 5WIS 4V8E 4WRO 4V51 4V5C 6ND6 4V87 5HCQ 5IBB 6XHY 5J4B 4Z8C 4WSD 6CAE 4WT1 4WQR 5J4C 4WPO 5W4K 4V6G 1VY4 6OF1 4V8D 4WSD 6XHY 4V6G 4WQ1 5IBB 6CAE 4WQR 5HCQ 4V5F 5IB7 4V8D 5HCR 4Z8C 5J4B 4WQ1 5EL7 5DFE 6QNQ 6XHW 6XQD 4LNT 6ND5 4V7M 4W2H 4YZV 5W4K 4V5F 5DFE 4WRA 4WRA 6XHW 5EL6 5HAU 4W2G 5IB8 4WT1 4W2H 5HCR 5EL7 4LNT 5HD1 5HCP 6OF1 5HAU 5J4C 4W2I 5WIS 6XHV 5IB7 5EL6 5E7K 4V97 7CHD 4W4G 4W4G 4V87 4V63 4V8B 4V67 4V63 5D8B 4V8J 4V6G 4V8O 5D8B 4V8J 6QNQ 7CHD 4V87 4LEL 4V6G 4V8C 4WZO 4L71 5D8B 6B4V 6B4V 4V5K 6B4V 4LEL 4V8C 4V97 4V8B 4V67 4V5K 4V5K 6XZ7 6XZB 6XZA 6AZ1 6Y69 5AFI 5AFI 6WDE 6H4N 6WD0 6WDE 6WD0 5H5U 5J3C 7K00 6BOH 6BOH 3V11 4YPB 4YPB 4V4Z 4V8Q 4V4X 6GSJ 6GSJ 4V6A 4V6A 6GSL 6GSL 6BOH 6BOH 5WDT 4WZO 4V9I 4TUA 6GSK 4V67 6XQE 4TUB 4V7L 6N9E 4V7P 4V8B 4TUB 4V7L 4TUD 4LT8 6XQE 4TUA 4V5F 4TUC 6ND6 4YPB 1VY5 4V8B 4P6F 4LT8 4V87 4V8C 4TUC 4V7M 4V8E 5EL5 4V5F 4P6F 6N9E 4P70 4V8F 4LSK 4V6G 4V63 4LFZ 4LSK 4V63 1VVJ 4LFZ 3CW6 3QSY 4L71 6QNQ 5D8B 4V9I 5CZP 6GSK 4V8C 6N9F 4V5K 4V7P 5F8K 4V67 4P70 4TUD 1VVJ 6QNQ 4WQY 1VY7 6N9F 5CZP 6B4V
Structures from NR_all_35542.79