HL_10FZ_021

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

10FZ|1|A|A|968, 10FZ|1|A|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10FZ_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.5421

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

10FZ|1|A|G|963
10FZ|1|A|A|964
10FZ|1|A|U|965
10FZ|1|A|G|966
10FZ|1|A|C|967
10FZ|1|A|A|968
10FZ|1|A|A|969
10FZ|1|A|C|970
10FZ|1|A|G|971
10FZ|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10