HL_10PX_129

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

10PX|1|2A|A|781, 10PX|1|2A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10PX_129 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.0879

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

10PX|1|2A|U|779
10PX|1|2A|G|780
10PX|1|2A|A|781
10PX|1|2A|A|782
10PX|1|2A|A|783
10PX|1|2A|A|784
10PX|1|2A|G|785

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2