HL_10PX_152

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

10PX|1|2A|A|2030, 10PX|1|2A|A|2031, 10PX|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10PX_152 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1131

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

10PX|1|2A|G|2027
10PX|1|2A|U|2028
10PX|1|2A|G|2029
10PX|1|2A|A|2030
10PX|1|2A|A|2031
10PX|1|2A|G|2032
10PX|1|2A|A|2033
10PX|1|2A|U|2034
10PX|1|2A|G|2035
10PX|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2V

50S ribosomal protein L21