HL_10QM_012

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

10QM|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3171

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

10QM|1|I|A|382
10QM|1|I|C|383
10QM|1|I|A|384
10QM|1|I|C|385
10QM|1|I|G|386
10QM|1|I|U|387
10QM|1|I|G|388
10QM|1|I|G|389
10QM|1|I|U|390
10QM|1|I|A|391
10QM|1|I|U|392

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28