HL_10QM_019

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_019 not in the Motif Atlas

Homologous match to HL_7A0S_020

Geometric discrepancy: 0.1297

The information below is about HL_7A0S_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

10QM|1|I|G|629
10QM|1|I|G|630
10QM|1|I|A|631
10QM|1|I|A|632
10QM|1|I|A|633
10QM|1|I|C|634

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain l

Large ribosomal subunit protein bL35