HL_10QM_028

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_028 not in the Motif Atlas

Homologous match to HL_1MMS_004

Geometric discrepancy: 0.2857

The information below is about HL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

10QM|1|I|C|1092
10QM|1|I|G|1093
10QM|1|I|U|1094
10QM|1|I|A|1095
10QM|1|I|A|1096
10QM|1|I|U|1097
10QM|1|I|A|1098
10QM|1|I|G|1099

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain Q

Large ribosomal subunit protein uL11

Chain m

50S ribosomal protein L36