HL_10QM_034

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

10QM|1|I|U|1396, 10QM|1|I|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_034 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.325

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

10QM|1|I|G|1389
10QM|1|I|U|1390
10QM|1|I|U|1391
10QM|1|I|A|1392
10QM|1|I|A|1393
10QM|1|I|U|1394
10QM|1|I|A|1395
10QM|1|I|U|1396
10QM|1|I|U|1397
10QM|1|I|C|1398

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23