HL_10QM_054

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_054 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.2235

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

10QM|1|I|G|2304
10QM|1|I|U|2305
10QM|1|I|C|2306
10QM|1|I|G|2307
10QM|1|I|G|2308
10QM|1|I|A|2309
10QM|1|I|C|2310
10QM|1|I|A|2311
10QM|1|I|U|2312

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL5