HL_11AA_004

3D structure

PDB id

11AA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUUGG

Length

6 nucleotides

Bulged bases

11AA|1|3|U|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11AA_004 not in the Motif Atlas

Geometric match to HL_8B0X_010

Geometric discrepancy: 0.1052

The information below is about HL_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

11AA|1|3|C|37
11AA|1|3|U|38
11AA|1|3|U|39
11AA|1|3|U|40
11AA|1|3|G|41
11AA|1|3|G|42

Current chains

Chain 3

Internal transcribed spacer 2 ITS2

Nearby chains

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15