HL_11BQ_007

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_007 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1326

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11BQ|1|A|A|320
11BQ|1|A|A|321
11BQ|1|A|C|322
11BQ|1|A|U|323
11BQ|1|A|G|324
11BQ|1|A|A|325
11BQ|1|A|G|326
11BQ|1|A|A|327
11BQ|1|A|C|328
11BQ|1|A|A|329
11BQ|1|A|C|330
11BQ|1|A|G|331
11BQ|1|A|G|332
11BQ|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20