HL_11BQ_028

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

11BQ|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_028 not in the Motif Atlas

Geometric match to HL_9FN2_003

Geometric discrepancy: 0.1347

The information below is about HL_9FN2_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

11BQ|1|A|C|1449
11BQ|1|A|U|1450
11BQ|1|A|U|1451
11BQ|1|A|C|1452
11BQ|1|A|G|1453
11BQ|1|A|G|1454

Current chains

Chain A

16S ribosomal RNA

Nearby chains