HL_11BQ_057

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_057 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1474

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

11BQ|1|a|U|1222
11BQ|1|a|G|1223
11BQ|1|a|U|1224
11BQ|1|a|G|1225
11BQ|1|a|A|1226
11BQ|1|a|G|1227

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain p

50S ribosomal protein L20

Chain q

Large ribosomal subunit protein bL21