HL_11DG_002

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCGAGCGGCAGCACAGAGGAACUUGUUCCUUGGGUGGCGAGCG

Length

43 nucleotides

Bulged bases

11DG|1|A|A|65, 11DG|1|A|A|82, 11DG|1|A|U|84, 11DG|1|A|U|87, 11DG|1|A|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|A|U|62
11DG|1|A|C|63
11DG|1|A|G|64
11DG|1|A|A|65
11DG|1|A|G|66
11DG|1|A|C|67
11DG|1|A|G|68
11DG|1|A|G|69
11DG|1|A|C|70
11DG|1|A|A|71
11DG|1|A|G|72
11DG|1|A|C|73
11DG|1|A|A|74
11DG|1|A|C|75
11DG|1|A|A|76
11DG|1|A|G|77
11DG|1|A|A|78
11DG|1|A|G|79
11DG|1|A|G|80
11DG|1|A|A|81
11DG|1|A|A|82
11DG|1|A|C|83
11DG|1|A|U|84
11DG|1|A|U|85
11DG|1|A|G|86
11DG|1|A|U|87
11DG|1|A|U|88
11DG|1|A|C|89
11DG|1|A|C|90
11DG|1|A|U|91
11DG|1|A|U|92
11DG|1|A|G|93
11DG|1|A|G|94
11DG|1|A|G|95
11DG|1|A|U|96
11DG|1|A|G|97
11DG|1|A|G|98
11DG|1|A|C|99
11DG|1|A|G|100
11DG|1|A|A|101
11DG|1|A|G|102
11DG|1|A|C|103
11DG|1|A|G|104

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20