HL_11DG_021

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAU(2MG)(5MC)AACGC

Length

10 nucleotides

Bulged bases

11DG|1|A|2MG|966, 11DG|1|A|G|971

QA status

Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.3136

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11DG|1|A|G|963
11DG|1|A|A|964
11DG|1|A|U|965
11DG|1|A|2MG|966
11DG|1|A|5MC|967
11DG|1|A|A|968
11DG|1|A|A|969
11DG|1|A|C|970
11DG|1|A|G|971
11DG|1|A|C|972

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain M

Small ribosomal subunit protein uS13